BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC04RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig441 1451 0.0
>3x_Contig441
Length = 2196
Score = 1451 bits (732), Expect = 0.0
Identities = 840/866 (96%), Gaps = 8/866 (0%)
Strand = Plus / Minus
Query: 53 ttcaaaccctagagatatgccttagcgccta-tgttcattaccaatattctaacaaacat 111
|||||||| | || |||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 1441 ttcaaaccattgaaatatgccttaacgcctagtgttcattaccaatattctaacaaacat 1382
Query: 112 caataaagagaaacccgtagagctcgaaatgagtaaatactctcatccccgatattgatt 171
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 1381 caataaagagaaacccgtagagctcaaaatgagtaaatact-tcatccccgatattgatt 1323
Query: 172 ctaaggttttagaaagaaccaagctaccgacaaaag-tgtttgccagacatggatttact 230
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1322 ataaggttttagaaagaaccaagctaccgacaaaagctgtttgccagacatggatttact 1263
Query: 231 catgtgaatatttctgatgatattccggggggatacaaattgatttcaagtattctaaaa 290
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1262 catgtgaatatttctgatgatattcgggggggatacaaattgatttcaagtattctaaaa 1203
Query: 291 tgccatagcatggaagaagtaaatgctattgggaagaaatttcaattggaggatctagtt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 tgccatagcatggaagaagtaaatgctattgggaagaaatttcaattggaggatctagtt 1143
Query: 351 gaaaacaagagcaaaaagaaaagccctaactatgttctcatagctagtaaagcgtcaatg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 gaaaacaagagcaaaaagaaaagccctaactatgttctcatagctagtaaagcgtcaatg 1083
Query: 411 gctaaaaaattcaataagtgcgttaaagatgctgacaagaataagaaagtttttgttgtt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 gctaaaaaattcaataagtgcgttaaagatgctgacaagaataagaaagtttttgttgtt 1023
Query: 471 gaatggaattggtgcgtgaaaagcattttcgacttggatataaatctagaagatcatgaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 gaatggaattggtgcgtgaaaagcattttcgacttggatataaatctagaagatcatgaa 963
Query: 531 tatgtcatttataataagtaatgtaaccccagaatggctacgatggtataagaatatgta 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 tatgtcatttataataagtaatgtaaccccagaatggctacgatggtataagaatatgta 903
Query: 591 gtatatgtaacgatttatcgaatagttgaattctactcaataggtgaggttattgcaaag 650
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 902 gtatatgtaacgatttatcgaatagttg-attctactcaataggtgaggtta-tgcaaag 845
Query: 651 atattactatttccttgttactgttgattggagcaaccaagggaaaaagaatcaatgcta 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 atattactatttccttgttactgttgattggagcaaccaagggaaaaagaatcaatgcta 785
Query: 711 gaaatcaaacgttcaaaccagtccattccttaatagctntgtttgttctctcatagccct 770
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 784 gaaatcaaacgttcaaaccagtccattccttaatagctttgtttgttctctcatagcctc 725
Query: 771 ctttgaccgtggcagcaacattttttagtgtaatacgcagtattacaagctgccttcata 830
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ttttgaccgtggcagcaaca-tttttagtgtaatacgcagtattacaagctgccttcata 666
Query: 831 gtggcattggatagcctatcttggctactaacaaagacaggggagttccggtntctcgat 890
||||||||| ||||| ||||||| |||||||||||||||||| |||||| || |||||||
Sbjct: 665 gtggcattgtatagcttatcttgtctactaacaaagacagggaagttcc-gtttctcgat 607
Query: 891 gtcggatggccaaacttttagtattg 916
|||| || ||||||| ||||||||||
Sbjct: 606 gtcgtat-gccaaacgtttagtattg 582
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7026
Number of Sequences: 1807
Number of extensions: 7026
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)