BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC05FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1495 0.0
>3x_Contig1746
Length = 26672
Score = 1495 bits (754), Expect = 0.0
Identities = 832/854 (97%), Gaps = 3/854 (0%)
Strand = Plus / Minus
Query: 91 taagaacttataggcatgctccaaatactggttccaggaaatcttgggctgccggtgacg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22227 taagaacttataggcatgctccaaatactggttccaggaaatcttgggctgccggtgacg 22168
Query: 151 cagtggcaagagctgtcaacattgcatatttggtgaagaatggaagtccaggtacaattc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22167 cagtggcaagagctgtcaacattgcatatttggtgaagaatggaagtccaggtacaattc 22108
Query: 211 cttccgtactaacctttaagacatggggtttttatgacgttcttttcaaaggtaaaccat 270
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22107 cttccgtactaaccgctaagacatggggtttttatgacgttcttttcaaaggtaaaccat 22048
Query: 271 tcaccttccagcaaagggacactttcggttcttatgtgatggaaaacgttcttttcaaga 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22047 tcaccttccagcaaagggacactttcggttcttatgtgatggaaaacgttcttttcaaga 21988
Query: 331 tatcgttcccagcagaattccatgctcaaacggcagtggaagcagctattaaggtgaata 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21987 tatcgttcccagcagaattccatgctcaaacggcagtggaagcagctattaaggtgaata 21928
Query: 391 aacagttggcagagttgggcaaaacttacaaagacattaaaaaggtcagaattagaactc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21927 aacagttggcagagttgggcaaaacttacaaagacattaaaaaggtcagaattagaactc 21868
Query: 451 aagaagccgctgtgagaattattgacaaggagggtccattgtacaattatgctgacagag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21867 aagaagccgctgtgagaattattgacaaggagggtccattgtacaattatgctgacagag 21808
Query: 511 atcattgtattcaatacatgactgctattccattaatttacggtagactaacggctgacg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21807 atcattgtattcaatacatgactgctattccattaatttacggtagactaacggctgacg 21748
Query: 571 attacagtgatgaagtagcaagcaaccctgaaattgacgaattgagagctaagatgtatt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21747 attacagtgatgaagtagcaagcaaccctgaaattgacgaattgagagctaagatgtatt 21688
Query: 631 gtactaaagatgaccaattcactttggattatcatgatccatcaaagagatcaatcccaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21687 gtactaaagatgaccaattcactttggattatcatgatccatcaaagagatcaatcccaa 21628
Query: 691 acgctttgttagtagaattgaatgatgggactgtcttagatgaagtggtcgtagaatatt 750
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21627 acgctttgttagtagaattgaatgatgggactgtcttagatgaagtggtcgtagaatatc 21568
Query: 751 caatcggtcacagactaagaagaaaaggaggtgtcccactattgatgcagaatttctacc 810
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct: 21567 caatcggtcacagactaagaagaaaggaaggtgtcccactattgatgcagaaattctacc 21508
Query: 811 acc-tttgcgtgaacattttgccggcgatattgaaaggtgggaagcttttattggagcca 869
||| ||||||||||||||| |||||||||||||||| | ||||||||| || | ||| |
Sbjct: 21507 accatttgcgtgaacatttcgccggcgatattgaaaaggtggaagctttaatggaagcaa 21448
Query: 870 gtacagatgacggtttccttaacttaactgttgatgaat-tgtcaaactgttactgcgat 928
||||||||||||||||| | ||||||||||||||||||| |||||| || |||||||||
Sbjct: 21447 gtacagatgacggtttcttaaacttaactgttgatgaatatgtcaacatg-tactgcgat 21389
Query: 929 taagctttggcctt 942
||||||||| ||||
Sbjct: 21388 taagctttgtcctt 21375
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6166
Number of Sequences: 1807
Number of extensions: 6166
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)