BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC05RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1191 0.0
>3x_Contig1789
Length = 30977
Score = 1191 bits (601), Expect = 0.0
Identities = 625/629 (99%), Gaps = 3/629 (0%)
Strand = Plus / Minus
Query: 48 ataataaaataatttaaatgagtcgaattgaatgaatttattgtatattgtataataacg 107
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9977 ataataaaataatttaaatgagt-gaattgaatgaatttattgtatattgtataataacg 9919
Query: 108 agcgacaacaatatatttgaatgcaataataatagaaaaaagatgttaacccataaacgt 167
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9918 agcgacaacaatatatttgaatgcaataataat-gaaaaaagatgttaacccataaacgt 9860
Query: 168 ttcggtggcttaatgttgtagtttttttttaaaagttgtggcttaattgttacggatctt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9859 ttcggtggcttaatgttgtagtttttttttaaaagttgtggcttaattgttacggatctt 9800
Query: 228 tcatgaatcggcctatttcctctcactatgaccctttttttgacctggtatgtaagtgaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9799 tcatgaatcggcctatttcctctcactatgaccctttttttgacctggtatgtaagtgaa 9740
Query: 288 gagagtgtaatcacaatctttgattgaatgtaaagattgattctacaccgaaagatccca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9739 gagagtgtaatcacaatctttgattgaatgtaaagattgattctacaccgaaagatccca 9680
Query: 348 caattaataccttggtattctatttttttttcctttttagtgcagtttaaaaatgcttaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9679 caattaataccttggtattctatttttttttcctttttagtgcagtttaaaaatgcttaa 9620
Query: 408 taaaacaacctgttaccattcagaatgacattcataagtcgtgacctatttcccctgtgt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9619 taaaacaacctgttaccattcagaatgacattcataagtcgtgacctatttcccctgtgt 9560
Query: 468 ataaaataaattttgtatttccatagaatcgactatccatcagataaagacaaaaaaaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9559 ataaaataaattttgtatttccatagaatcgactatccatcagataaagacaaaaaaaat 9500
Query: 528 gaaaaatctaaaggaaaagtaagattgatggtagaatcaaaaacttgtaacaaatatttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9499 gaaaaatctaaaggaaaagtaagattgatggtagaatcaaaaacttgtaacaaatatttc 9440
Query: 588 atcatgaattcggaaatgttttaaacaatttgatgactgcatgcatccttctcgcttctt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9439 atcatgaattcggaaatgttttaaacaatttgatgactgcatgcatccttctcgcttctt 9380
Query: 648 tcttctg-tggtattttttttttagttta 675
||||||| ||||||||||||||| |||||
Sbjct: 9379 tcttctgatggtattttttttttcgttta 9351
Score = 194 bits (98), Expect = 2e-49
Identities = 193/218 (88%), Gaps = 5/218 (2%)
Strand = Plus / Minus
Query: 717 aaggttcctcttcttttattgaaatatgtggaattgtcaccaaacattggaaagctgaca 776
||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 9306 aaggttcctctcctttaattgacatatgtggaattgaaaccaaacattggaaagctgaca 9247
Query: 777 tttttgttatgctgcattatatttggagaagagcgtgggggcattccgtttggaggggta 836
||| |||||||||||||||| | || |||||||||| ||| |||||||||||||||
Sbjct: 9246 tttctgttatgctgcattatctaaaaagcggagcgtgggg-catcccgtttggaggggta 9188
Query: 837 ttcgattgtgaattcgacattggaatcatattagatc-attgtaaattcccggttta-at 894
||||||||||||| ||||||||||| ||||||||||| |||| |||||||||| | ||
Sbjct: 9187 ttcgattgtgaatccgacattggaaccatattagatccattgagaattcccggtaaagat 9128
Query: 895 atcaaatgatgatttgggacatattggaagtcaaccct 932
| |||||||||||| |||||||||||||||||||||||
Sbjct: 9127 a-caaatgatgatt-gggacatattggaagtcaaccct 9092
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,869
Number of Sequences: 1807
Number of extensions: 11869
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)