BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC06RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1435 1415 0.0
>3x_Contig1435
Length = 8899
Score = 1415 bits (714), Expect = 0.0
Identities = 808/830 (97%), Gaps = 7/830 (0%)
Strand = Plus / Minus
Query: 50 ccaaaactgaaaggtttagctttttccttct-aatattttttgacgaatcatttcctaca 108
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2866 ccaaaactgaaaggtttagctttttccttctcaatattttttgacgaatcatttcctaca 2807
Query: 109 ggtttaccaccaaagctgaatgatggcagcactggtgcttcagtttttgtaccatctggt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2806 ggtttaccaccaaagctgaatgatggcagcactggtgcttcagtttttgtaccatctggt 2747
Query: 169 ctctttgcggcaggttcagtactaccactggaaccaaactgaaatagtggtttaggtgta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2746 ctctttgcggcaggttcagtactaccactggaaccaaactgaaatagtggtttaggtgta 2687
Query: 229 ttagttgattgagaggtactcaatggggtcagatctggagtagatgattttcctttgttg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2686 ttagttgattgagaggtactcaatggggtcagatctggagtagatgattttcctttgttg 2627
Query: 289 aagctaaacataggttttgacatttcactgacattagttggttcgcctgcatctttttgg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2626 aagctaaacataggttttgacatttcactgacattagttggttcgcctgcatctttttgg 2567
Query: 349 ctgccaaaactgaatgaaggggcgggtttagctatctctttgccttctgaagattttcca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2566 ctgccaaaactgaatgaaggggcgggtttagctatctctttgccttctgaagattttcca 2507
Query: 409 aaactaaatgtaggtatatttgatatcccagttgtatccgcaccagtgaagctgaactta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 aaactaaatgtaggtatatttgatatcccagttgtatccgcaccagtgaagctgaactta 2447
Query: 469 gggaggccgtctttagccagattttcaacaggttcgggggcggatttctcaaaggggttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2446 gggaggccgtctttagccagattttcaacaggttcgggggcggatttctcaaaggggttt 2387
Query: 529 ttggatgtttcagcttttttggtctctttcttggtttttgataaatcaccaaaggtgaaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2386 ttggatgtttcagcttttttggtctctttcttggtttttgataaatcaccaaaggtgaaa 2327
Query: 589 gaaggagcaccatctgagatttttgtgcctccattggctgtagctgtgttgttttttttt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 gaaggagcaccatctgagatttttgtgcctccattggctgtagctgtgttgttttttttt 2267
Query: 649 accgcatcaaaagaaaaagcaggttttcgatggttcagttgatgtttccagcgacttaga 708
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2266 accgcatcaaaagaaaaagcagg-tttcgatggttcagttgatgtttccagcgacttaga 2208
Query: 709 acttgtgaagggaaatggtttaacaatgtcctcagtagaactaaattctttctttttttc 768
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 2207 acttgtgaagggaaatggtttaacagtgtcctcagtagaactaaattctttc-ttttttc 2149
Query: 769 ttgggaactttttcaaatccttgagaaggggcccgttaatttctggttatcaattgtgaa 828
|||| |||| || ||||| |||||||||| ||||||||||||| |||||| | ||||
Sbjct: 2148 ttggtaactcttcagaatcc-tgagaagggg-ccgttaatttctgtttatcattgttgaa 2091
Query: 829 taaaaccaatttgggtttttccaaaaaaattattttttggatactgttgg 878
|||| ||||||| ||| ||||||||| | || |||||||||||||||||
Sbjct: 2090 taaatccaattt-ggtatttccaaaagatata-tttttggatactgttgg 2043
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,149
Number of Sequences: 1807
Number of extensions: 10149
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)