BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC07FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1024 1413 0.0
>3x_Contig1024
Length = 3867
Score = 1413 bits (713), Expect = 0.0
Identities = 789/805 (98%), Gaps = 7/805 (0%)
Strand = Plus / Plus
Query: 91 ctttctgatttttgcttgagatcggccggacttttgccaaacattgaaaacttgcttgtt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 ctttctgatttttgcttgagatcggccggacttttgccaaacattgaaaacttgcttgtt 2485
Query: 151 ctattcacggcttcatcggtggaattatgatgaatgagctggtctttcttttctgaagag 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 ctattcacggcttcatcggtggaattatgatgaatgagctggtctttcttttctgaagag 2545
Query: 211 acaaaaaagctttccgctgtgctgttggacttaaataattttgtatacccgtccttcaag 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 acaaaaaagctttccgctgtgctgttggacttaaataattttgtatacccgtccttcaag 2605
Query: 271 gcataaagattttgaaagtctagatacaccttcttttctttgtcatagtatagactatta 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 gcataaagattttgaaagtctagatacaccttcttttctttgtcatagtatagactatta 2665
Query: 331 gcaagaaaagatgcatattctgatttccccaagataatctcattaggatattcatagtca 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 gcaagaaaagatgcatattctgatttccccaagataatctcattaggatattcatagtca 2725
Query: 391 tctaaaactttgacaagttgcctaattttgttgaataataacactgactcctgttcgagc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2726 tctaaaactttgacaagttgcctaattttgttgaataataacactgactcctgttcgagc 2785
Query: 451 tggttcagtaaatcaccattattagaaggagtagattggagagaatgaacgttagcctta 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2786 tggttcagtaaatcaccattattagaaggagtagattggagagaatgaacgttagcctta 2845
Query: 511 ttaccatcgctatcctcttcacttttcagtaagctgaggagctcttcaccaaaaacttcg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2846 ttaccatcgctatcctcttcacttttcagtaagctgaggagctcttcaccaaaaacttcg 2905
Query: 571 gtgttattttcgctcattttttcgaattctagcccgccgatactaaattcacttttttcg 630
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2906 gtgttattgtcgctcattttttcgaattctagcccgccgatactaaattcacttttttcg 2965
Query: 631 gttggtttatcttgaacaattttgaacatgtgttccatactgacacttcttacagttttc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 gttggtttatcttgaacaattttgaacatgtgttccatactgacacttcttacagttttc 3025
Query: 691 gaagatttactttcctctgatgttgcaaatatattgattaggtctgtttctctc-aatat 749
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 3026 gaagatttactttcctctgatgttgcaaatatattgattagttctgtttctctcaaatat 3085
Query: 750 ttatcaattaagaaaagattagctggcaag-tcttca-aatatttttgatttatttcaag 807
||||||||||||||| |||||||||||||| |||||| |||| | |||| ||| ||||||
Sbjct: 3086 ttatcaattaagaaaggattagctggcaagttcttcagaata-tcttgacttaattcaag 3144
Query: 808 tttgggcctagtcagactgctactcaattttcaattttttaggagcaaagtccgagcttc 867
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 3145 ttttggcctagtcagactgctactcaa-tttcaattttttaggagcaaagt-cgagcttc 3202
Query: 868 ttttccggaaattttgcccaaataa 892
|||| ||| ||||||| ||||||||
Sbjct: 3203 tttt-cggtaattttgtccaaataa 3226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8035
Number of Sequences: 1807
Number of extensions: 8035
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)