BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC07RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1481 0.0
>3x_Contig1647
Length = 14353
Score = 1481 bits (747), Expect = 0.0
Identities = 816/831 (98%), Gaps = 6/831 (0%)
Strand = Plus / Plus
Query: 92 ccagtaatatatcaggaaaaaaagaattatccgcaatagccataataaccccaaaggaaa 151
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5992 ccagtaatatatc-ggaaaaaaagaattatccgcaatagccataataaccccaaaggaaa 6050
Query: 152 atgaatcaaccattgatcactagcacaatgggcgttggtatttgcatactgagcaccagg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6051 atgaatcaaccattgatcactagcacaatgggcgttggtatttgcatactgagcaccagg 6110
Query: 212 caccggagatcgggtgttaagctaacgttggccaccgggcatccgatcccaatctgtatt 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6111 caccggagatcgggtgttaagctaacgttggccaccgggcatccgatcccaatctgtatt 6170
Query: 272 atggtgatatgcatgcaatgcgaacccaaatcgagcaaaaaaagaaaaaaaaattgagag 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6171 atggtgatatgcatgcaatgcgaacccaaatcgagcaaaaaaagaaaaaaaaattgagag 6230
Query: 332 gacctgcatgaaaagaaataaaaaattccgcgacacacagaaaagtgaaacaaaaagtaa 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6231 gacctgcatgaaaagaaataaaaaattccgcgacacacagaaaagtgaaacaaaaagtaa 6290
Query: 392 ctcactctacgagccagcaatatgtgttcctgttccaaaaactcaacttttagagtagga 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6291 ctcactctacgagccagcaatatgtgttcctgttccaaaaactcaacttttagagtagga 6350
Query: 452 attcagtttctttctctatctagtgcgttagagcagctcagagatcaacgagagaaatca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6351 attcagtttctttctctatctagtgcgttagagcagctcagagatcaacgagagaaatca 6410
Query: 512 gttcagattttgttagagagaagtacggagaaatgtcccttttctttttttatctctatc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6411 gttcagattttgttagagagaagtacggagaaatgtcccttttctttttttatctctatc 6470
Query: 572 ttggtgtacttcctatgtgcttggttggtatacgggacgtattgccatttcccagagtat 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6471 ttggtgtacttcctatgtgcttggttggtatacgggacgtattgccatttcccagagtat 6530
Query: 632 agaccgttcaaaccatccatggctacccccccattatggcaaccttcgacgtatcggtag 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6531 agaccgttcaaaccatccatggctacccccccattatggcaaccttcgacgtatcggtag 6590
Query: 692 atctacagagttatccctgaacatacatttaagtatatatacatacatgtattatgccat 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6591 atctacagagttatccctgaacatacatttaagtatatatacatacatgtattatgccat 6650
Query: 752 tactgatgctgaacactggaaaaac-acagcaacattaatccgcac-ataaaatcttact 809
||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 6651 tactgatgctgaacactggaaaaacaacagcaacataaatccgcacaataaaatcttact 6710
Query: 810 tgtgagtttgcataaattaagctatttaccgttttgagatcacgcttacgg-tgtcctaa 868
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 6711 tgtgagtttgcataaattaagctatttaccgttttgagatcaccgctacggttgtcctag 6770
Query: 869 ccttttacttctcagaaccgt-caaaattg-atttgaaagcaaattgtttt 917
||||| ||||||||||||||| |||||| | |||||||||| ||| |||||
Sbjct: 6771 cctttaacttctcagaaccgtccaaaatcgaatttgaaagcgaatagtttt 6821
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8546
Number of Sequences: 1807
Number of extensions: 8546
Number of successful extensions: 128
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)