BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC08FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig17 222 1e-57
3x_Contig1487 200 4e-51
3x_Contig1623 198 1e-50
3x_Contig1718 196 6e-50
3x_Contig1762 194 2e-49
3x_Contig1390 172 8e-43
3x_Contig629 121 3e-27
>3x_Contig17
Length = 819
Score = 222 bits (112), Expect = 1e-57
Identities = 130/136 (95%)
Strand = Plus / Plus
Query: 531 aaaaaaattcggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagt 590
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aaaaaaatttggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagt 186
Query: 591 taaacctcgtttaacgaggtttggctaagctattaacccaaagcgagaatcataccacta 650
||||||||||||| ||| | || |||| ||||||||||||||||||||||||||||||||
Sbjct: 187 taaacctcgtttatcgaagcttcgctaggctattaacccaaagcgagaatcataccacta 246
Query: 651 gaccacacgccctaat 666
||||||||||||||||
Sbjct: 247 gaccacacgccctaat 262
>3x_Contig1487
Length = 9002
Score = 200 bits (101), Expect = 4e-51
Identities = 119/125 (95%)
Strand = Plus / Plus
Query: 538 ttcggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacct 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5328 ttcggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaactt 5387
Query: 598 cgtttaacgaggtttggctaagctattaacccaaagcgagaatcataccactagaccaca 657
|||||| ||| | || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5388 cgtttatcgaagcttcgctaggctattaacccaaagcgagaatcataccactagaccaca 5447
Query: 658 cgccc 662
|||||
Sbjct: 5448 cgccc 5452
>3x_Contig1623
Length = 14379
Score = 198 bits (100), Expect = 1e-50
Identities = 118/124 (95%)
Strand = Plus / Plus
Query: 541 ggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacctcgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7007 ggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacttcgt 7066
Query: 601 ttaacgaggtttggctaagctattaacccaaagcgagaatcataccactagaccacacgc 660
||| ||| | || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7067 ttatcgaagcttcgctaggctattaacccaaagcgagaatcataccactagaccacacgc 7126
Query: 661 ccta 664
||||
Sbjct: 7127 ccta 7130
>3x_Contig1718
Length = 19496
Score = 196 bits (99), Expect = 6e-50
Identities = 129/139 (92%)
Strand = Plus / Minus
Query: 525 aaatttaaaaaaattcggggcgagctgggaattgaacccagggcctctcgcatgctttgc 584
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5043 aaattaaaaaaaatctggggcgagctgggaattgaacccagggcctctcgcatgctttgc 4984
Query: 585 agtagttaaacctcgtttaacgaggtttggctaagctattaacccaaagcgagaatcata 644
||||||||||| ||||||| ||| | || |||| |||| |||||||||||||||||||||
Sbjct: 4983 agtagttaaacttcgtttatcgaagcttcgctaggctactaacccaaagcgagaatcata 4924
Query: 645 ccactagaccacacgccct 663
|||||||||||||||||||
Sbjct: 4923 ccactagaccacacgccct 4905
>3x_Contig1762
Length = 22098
Score = 194 bits (98), Expect = 2e-49
Identities = 119/126 (94%)
Strand = Plus / Minus
Query: 541 ggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacctcgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6231 ggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaactccgt 6172
Query: 601 ttaacgaggtttggctaagctattaacccaaagcgagaatcataccactagaccacacgc 660
||| ||| | || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6171 ttatcgaagcttcgctaggctattaacccaaagcgagaatcataccactagaccacacgc 6112
Query: 661 cctaat 666
||||||
Sbjct: 6111 cctaat 6106
>3x_Contig1390
Length = 7609
Score = 172 bits (87), Expect = 8e-43
Identities = 118/127 (92%), Gaps = 1/127 (0%)
Strand = Plus / Minus
Query: 541 ggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacctcgt 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 5563 ggggcgagctgggaattgaacccagggcctctcgcatgctt-gcagtagttaaacttcgt 5505
Query: 601 ttaacgaggtttggctaagctattaacccaaagcgagaatcataccactagaccacacgc 660
||| ||| | || || | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5504 ttatcgaagcttcgccaggctgttaacccaaagcgagaatcataccactagaccacacgc 5445
Query: 661 cctaata 667
|||||||
Sbjct: 5444 cctaata 5438
>3x_Contig629
Length = 1774
Score = 121 bits (61), Expect = 3e-27
Identities = 100/109 (91%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 802 attccatacttgcatatatctcaactta-caaccctccggttaacctgagacaatttccc 860
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1770 attccatactgcaatatatctcaacttaacaaccctcgggttaacctgagacaatttccg 1711
Query: 861 ggttttcttgcaggccagtatgaaatg-aaatatggct-ttagttaaat 907
||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 1710 ggttttcttgcaggcgagtatgaaatgaaaatatggctattagttaaat 1662
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6365
Number of Sequences: 1807
Number of extensions: 6365
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 7
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)