BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC08RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1441 0.0
3x_Contig38 777 0.0
>3x_Contig1517
Length = 8289
Score = 1441 bits (727), Expect = 0.0
Identities = 823/851 (96%), Gaps = 3/851 (0%)
Strand = Plus / Plus
Query: 77 attacctgcaagttaacctgactgtcatgatccaatattctttcatataatcttatcatt 136
||||||||| |||||| ||| | ||||||| |||||||||||||||| ||||||||||
Sbjct: 4645 attacctgcgagttaaactgtcgtacatgatcgaatattctttcatata-tcttatcatt 4703
Query: 137 tttgtttgaaccactcaatgcgcgttcaactacatcccacatccttttatttacaactgc 196
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4704 tttgtttgaaccactcaattcgcgttcaactacatcccacatccttttatttacaactgc 4763
Query: 197 tttgaatgagttcaaccctgaatcaattttatgtttctttatcccatcggttcccctagg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4764 tttgaatgagttcaaccctgaatcaattttatgtttctttatcccatcggttcccctagg 4823
Query: 257 agccaacgataggttttcgaaatcatatattagccgttgtttcttatagttatcgattcc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 agccaacgataggttttcgaaatcatatattagccgttgtttcttatagttatcgattcc 4883
Query: 317 tatcgggtcaggactccttgacctcttcatcttgaagcctgatgacattgtatagctaat 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 tatcgggtcaggactccttgacctcttcatcttgaagcctgatgacattgtatagctaat 4943
Query: 377 accttgctcattcgcagtgaactattctaagcagatgatctgttcgctgctacttttgta 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 accttgctcattcgcagtgaactattctaagcagatgatctgttcgctgctacttttgta 5003
Query: 437 ggtgttgtttcgtttgtcctaatttatcttatggccaaccgagaactttctggaagctta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 ggtgttgtttcgtttgtcctaatttatcttatggccaaccgagaactttctggaagctta 5063
Query: 497 aaatgaagatcattagaaatgtttgtaaattcacccgttaagaaagtttcgtagatgaag 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 aaatgaagatcattagaaatgtttgtaaattcacccgttaagaaagtttcgtagatgaag 5123
Query: 557 ctgatactacaggtactggttatctttttcttgttagatatctcttgatcgagccttcaa 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 ctgatactacaggtactggttatctttttcttgttagatatctcttgatcgagccttcaa 5183
Query: 617 tattgcctttaatatgctttttttcttttgtttcttctaagagatatgtatttgatcttc 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 tattgcctttaatatgctttttttcttttgtttcttctaagagatatgtatttgatcttc 5243
Query: 677 ttcataattaagggtttcgaatgtc-ttttcatactgaaacatttagttcacagcacctt 735
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 5244 ttcataattaagggtttcgaatgtctttttcatactgaaacatttagttcacagcaactt 5303
Query: 736 gttttactttaacaacgttattagaaaaaatttatgatttctatcactgcaagctttggg 795
| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct: 5304 ggtttacttcaacaacgttataagaaaaagtttatgatttctatcactgcaagcttgtga 5363
Query: 796 atcatctttggacctgctcatgtttggcaattgagctttgttccatactcccccatttcc 855
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
Sbjct: 5364 atcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccattttc 5423
Query: 856 taatgcttctttcgaaactaaacaatccatcactggatctttatgcgatagtttg-attc 914
||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 5424 taatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaattc 5483
Query: 915 cacgatttcca 925
||||||||||
Sbjct: 5484 gacgatttcca 5494
>3x_Contig38
Length = 925
Score = 777 bits (392), Expect = 0.0
Identities = 448/467 (95%), Gaps = 11/467 (2%)
Strand = Plus / Plus
Query: 77 attacctgcaagttaacctgactgtcatgatccaatattctttcatataatcttatcatt 136
||||||||| |||||| ||| | ||||||| |||||||||||||||| ||||||||||
Sbjct: 128 attacctgcgagttaaactgtcgtacatgatcgaatattctttcatata-tcttatcatt 186
Query: 137 tttgtttgaaccactcaatgcgcgttcaactacatcccacatccttttatttacaactgc 196
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tttgtttgaaccactcaattcgcgttcaactacatcccacatccttttatttacaactgc 246
Query: 197 tttgaatgagttcaaccctgaatcaattttatgtttctttatcccatcggttcccctagg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttgaatgagttcaaccctgaatcaattttatgtttctttatcccatcggttcccctagg 306
Query: 257 agccaacgataggttttcgaaatcatatattagccgttgtttcttatagttatcgattcc 316
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agccaacgataggttttcgaaatcatatattagccgttgtttcttatagt---------- 356
Query: 317 tatcgggtcaggactccttgacctcttcatcttgaagcctgatgacattgtatagctaat 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tatcgggtcaggactccttgacctcttcatcttgaagcctgatgacattgtatagctaat 416
Query: 377 accttgctcattcgcagtgaactattctaagcagatgatctgttcgctgctacttttgta 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 accttgctcattcgcagtgaactattctaagcagatgatctgttcgctgctacttttgta 476
Query: 437 ggtgttgtttcgtttgtcctaatttatcttatggccaaccgagaactttctggaagctta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggtgttgtttcgtttgtcctaatttatcttatggccaaccgagaactttctggaagctta 536
Query: 497 aaatgaagatcattagaaatgtttgtaaattcacccgttaagaaagt 543
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaatgaagatcattagaaatgtttgtaaattcacccgttaagaaagt 583
Score = 287 bits (145), Expect = 2e-77
Identities = 188/201 (93%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 588 tgttagatatctcttgatcgagccttcaatattgcctttaatatgctttttttcttttgt 647
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 618 tgttagatatctcttgaacgagccttcaatattgcctttaatatgcttttcttcttttgt 677
Query: 648 ttcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtc-ttttc 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 678 ttcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttc 737
Query: 707 atactgaaacatttagttcacagcaccttgttttactttaacaacgttattagaaaaaat 766
||||||||||||||||||||||||| |||| ||||||| ||||||||||| || || |
Sbjct: 738 atactgaaacatttagttcacagcaacttggtttacttcaacaacgttataagtctaatt 797
Query: 767 ttatgatttctatcactgcaa 787
|||| |||||||||||||||
Sbjct: 798 ttattttttctatcactgcaa 818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8009
Number of Sequences: 1807
Number of extensions: 8009
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 2
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)