BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC09FM1.SCF screened BAC_end
(1005 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig823 1231 0.0
>3x_Contig823
Length = 3303
Score = 1231 bits (621), Expect = 0.0
Identities = 682/692 (98%), Gaps = 8/692 (1%)
Strand = Plus / Plus
Query: 88 tgaaattctgtcaggatctaactagttcgagggaaattgaagcatgtaacacaaatggca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgaaattctgtcaggatctaactagttcgagggaaattgaagcatgtaacacaaatggca 490
Query: 148 gatggagttacataccacaatgctgcttagataaaccagaaaaaaaagaccactacccga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gatggagttacataccacaatgctgcttagataaaccagaaaaaaaagaccactacccga 550
Query: 208 gagagaatctaaaagagattagagaattggcagaaacactgagatgaaataaaaagagcc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gagagaatctaaaagagattagagaattggcagaaacactgagatgaaataaaaagagcc 610
Query: 268 tacacaactcttttgttcctcttcatttgaactttcaactaacttcttattgacggggag 327
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tacacaactcttttgttcctcttcatttgaactttcaactaacttcttattgacgggga- 669
Query: 328 ttctctatagccgaaattcattccatccttgactgcggtcctgcttctcattattacgcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttctctatagccgaaattcattccatccttgactgcggtcctgcttctcattattacgcc 729
Query: 388 aatc-cacttcgttatggacgggaattcaataccgcagatcacgcgatgtaatcacacaa 446
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aatcacacttcgttatggacgggaattcaataccgcagatcacgcgatgtaatcacacaa 789
Query: 447 tacgaatcattaccctacctaaatcatcaagggttccaacggccactgtggcgagaaacg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tacgaatcattaccctacctaaatcatcaagggttccaacggccactgtggcgagaaacg 849
Query: 507 aattagactctgcagaaccctccccccggtttcatgtttgaaacggactttttcacaata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 aattagactctgcagaaccctccccccggtttcatgtttgaaacggactttttcacaata 909
Query: 567 tggcaaccgaactttcttaggctgtgcaatgcgactaanaggattccgtactcgtacatc 626
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 910 tggcaaccgaactttcttaggctgtgcaatgcgactaaaaggattccgtactcgtacatc 969
Query: 627 ttgagagagcttataagacaatgactacaaaattcgagacggccaagagtcttatttccg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 ttgagagagcttataagacaatgactacaaaattcgagacggccaagagtcttatttccg 1029
Query: 687 caaagaatcgaatcatcggggacgctttgtcttgaatatatctttccggttcaggccaag 746
||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct: 1030 caaagaatcgaatcatc-gggacgc-ttgtcttgaatatatcttt-cggttca-gccaag 1085
Query: 747 cctttttaagaatgtatttacgggatgtagta 778
|||| ||||||||||||||| ||||||||||
Sbjct: 1086 -ctttctaagaatgtatttac-ggatgtagta 1115
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6118
Number of Sequences: 1807
Number of extensions: 6118
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 1005
length of database: 10,358,551
effective HSP length: 16
effective length of query: 989
effective length of database: 10,329,639
effective search space: 10216012971
effective search space used: 10216012971
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)