BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC09RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1240 220 4e-57
>3x_Contig1240
Length = 5468
Score = 220 bits (111), Expect = 4e-57
Identities = 157/171 (91%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 746 caatggcttttcgaatattgattccaatagtaaaatcatcacagcagagatggtcttggg 805
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 4 caatggcttttcgaataatgatcccaatagtaaaatcatcacagcagagatggtct-gga 62
Query: 806 acacagtttaaaagtacacggaatttgacacgggcaattcatgttcattaccgtaagcat 865
|||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 63 acacagttaaaatgtacacggaatatgacacgggcaattcatgttcatcaccgtaagcat 122
Query: 866 gtcggatactgaaagtaatcctttgggatccttgaaaaaaactttcgaaca 916
||| ||||||||| |||||| || |||||||||||| |||||||||||||
Sbjct: 123 gtctgatactgaagttaatccatttggatccttgaaataaactttcgaaca 173
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7341
Number of Sequences: 1807
Number of extensions: 7341
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)