BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC10FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1489 0.0
>3x_Contig1654
Length = 17174
Score = 1489 bits (751), Expect = 0.0
Identities = 808/825 (97%), Gaps = 2/825 (0%)
Strand = Plus / Minus
Query: 90 tttgatatca-taaacgtcgattcgaagcctgctgcctttattaaattatcacgttcttc 148
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7233 tttgatatcaataaacgtcgattcgaagcctgctgcctttattaaattatcacgttcttc 7174
Query: 149 agctgtcaaatccatattatccaagagaaattttaggatattgctgacatcgttagaaat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7173 agctgtcaaatccatattatccaagagaaattttaggatattgctgacatcgttagaaat 7114
Query: 209 gttttcattatgttgtaggtaatcattgacctcctccaacattgtttcgtactcatcctt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7113 gttttcattatgttgtaggtaatcattgacctcctccaacattgtttcgtactcatcctt 7054
Query: 269 atttcgtactaattcttctttcaatctgattaactctttattcttgtcctccaatgtgat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7053 atttcgtactaattcttctttcaatctgattaactctttattcttgtcctccaatgtgat 6994
Query: 329 tactagttttacattctgctctcgaagtaaaggagaatcttcgacctcttcgatgttggt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6993 tactagttttacattctgctctcgaagtaaaggagaatcttcgacctcttcgatgttggt 6934
Query: 389 atttgcatgactctcaaaatcgtttgtaatgttttctgtattttgggtagcctgcaattt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6933 atttgcatgactctcaaaatcgtttgtaatgttttctgtattttgggtagcctgcaattt 6874
Query: 449 ttgatcgttattgaaattaacttgctttaagatctcggtcaaggccttaactttcactct 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6873 ttgatcgttattgaaattaacttgctttaagatctcggtcaaggccttaactttcactct 6814
Query: 509 gtactgtaccaattgtctctttaaaacatcagtttcactagtcatcaaatgcgaatctgc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6813 gtactgtaccaattgtctctttaaaacatcagtttcactagtcatcaaatgcgaatctgc 6754
Query: 569 tatattaggtggataaaagtcatttatggtcccacgctgcaaccgttgtgtagatacctt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6753 tatattaggtggataaaagtcatttatggtcccacgctgcaaccgttgtgtagatacctt 6694
Query: 629 tcttgaatcattcggaaaccgatatttttcatgtgtatcattatttctttcaa-tacagc 687
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 6693 tcttgaatcattcggaaaccgatatttttcatgtgtatcattatttcttccaattacagc 6634
Query: 688 aggaaccctaccatcttccttaatccaccgattatcgctgcttatcaattggaaaatatc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6633 aggaaccctaccatcttccttaatccaccgattatcgctgcttatcaattggaaaatatc 6574
Query: 748 tccactactgatcaccgtatcagtctctgangtagtattatcagtcgtaggttcttcttt 807
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 6573 tccactactgatcaccgtatcagtctctgaggtagtattatcagtcgtagtttcttcttc 6514
Query: 808 ctcctcctcgctcaccgccagattgattcggctcgggacattacaatantatttattccc 867
||||||||||||||||| |||||| || ||||| ||||||||||| ||||||||| |
Sbjct: 6513 gtcctcctcgctcaccgcagaattgatccgcctcggcacattacaataatatttattcac 6454
Query: 868 ataaacatcttggctagtatcaatagcaatttggttgcaactacc 912
|||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 6453 ataatcatctttgctagtatcaatagcaatttggttgcaactacc 6409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6446
Number of Sequences: 1807
Number of extensions: 6446
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)