BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC10RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1542 0.0
>3x_Contig1584
Length = 9710
Score = 1542 bits (778), Expect = 0.0
Identities = 830/844 (98%), Gaps = 3/844 (0%)
Strand = Plus / Plus
Query: 68 attctacgtgtgttcgcattcccagcgttgttagacaagacgttccttgcactcttgatg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4012 attctacgtgtgttcgcattcccagcgttgttagacaagacgttccttgcactcttgatg 4071
Query: 128 accggtgatctcggggcgatgagaatcatgagaagctactatcagttgttaagaggattc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4072 accggtgatctcggggcgatgagaatcatgagaagctactatcagttgttaagaggattc 4131
Query: 188 gcaagtgaaatgaaagatgaggtctggttcctagaaggcatgactcaggtactaccacag 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4132 gcaagtgaaatgaaagatgaggtctggttcctagaaggcatgactcaggtactaccacag 4191
Query: 248 gatgtcgatgaatacagtggtggtggtggtatgcacatgatgttggatttcttaggcgga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4192 gatgtcgatgaatacagtggtggtggtggtatgcacatgatgttggatttcttaggcgga 4251
Query: 308 gggttaccctccatgactacaaccaacttgacggattttggaattttctagatcaactat 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4252 gggttaccctccatgactacaaccaacttgacggattttggaattttctagatcaactat 4311
Query: 368 tcgtaccttaaaaatggactttcagtatggaaaaatcaaaaaaatcgaagagacgttacc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4312 tcgtaccttaaaaatggactttcagtatggaaaaatcaaaaaaatcgaagagacgttacc 4371
Query: 428 actgcacaaaactagcatgagaaacctttaattcttgttcacaatatgaaattttcaact 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4372 actgcacaaaactagcatgagaaacctttaattcttgttcacaatatgaaattttcaact 4431
Query: 488 tttgcacttttacaaattgtaaatatgtatatatatgcacatacatacccacacacagat 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4432 tttgcacttttacaaattgtaaatatgtatatatatgcacatacatacccacacacagat 4491
Query: 548 aggagtaaatatctttcacttgttttatgcattttaatggcatatttattataaagtgtt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4492 aggagtaaatatctttcacttgttttatgcattttaatggcatatttattataaagtgtt 4551
Query: 608 ttcaagaattagtcgtaaagtgacattggaagcgagagatggtcgttcataatcctaaca 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4552 ttcaagaattagtcgtaaagtgacattggaagcgagagatggtcgttcataatcctaaca 4611
Query: 668 attggcattgggtcgataagaactgtattgactgggcaaagaaatacttccaagaaaaaa 727
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4612 attggcattgggtcgataagaactgtattgactgggcaaagaaatacttccaag-aaaaa 4670
Query: 728 ttggttggtttgactaccgggagatcaacagatgaactgtatgcagaaattacaaagcta 787
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4671 ttggttggtttgactaccggagaatcaacagatgaactgtatgcagaaattacaaagcta 4730
Query: 788 tcatcatttgaaggtgattgcgaggtgaaccaacgngaaggtanggtgatttctttattt 847
|||||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct: 4731 tcatcattagaaggtgattgcgaggtgaaccaacggaagggtaaggtgatttctttattt 4790
Query: 848 gatttgaaattg-atgttgggattgcgggtcatgtgggttgaaaacaaattagaatggtt 906
|||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct: 4791 gatttgaaattgaatgttggtattgcgggtcatgtggg-tgaaaacaaattagaagggtc 4849
Query: 907 catc 910
||||
Sbjct: 4850 catc 4853
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7867
Number of Sequences: 1807
Number of extensions: 7867
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)