BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC11RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1548 0.0
>3x_Contig1724
Length = 20938
Score = 1548 bits (781), Expect = 0.0
Identities = 865/884 (97%), Gaps = 7/884 (0%)
Strand = Plus / Minus
Query: 48 ttttcacaaatttcaattccactagttccttcatcttgaggacagtaacgtataagttcc 107
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19403 ttttcacaagtttcaattccactagttccttcatcttgaggacagtaacgtataagttcc 19344
Query: 108 tcttgactaggtaaaactcattgtcttcaataaatttctcatagagtttcaagttgccag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19343 tcttgactaggtaaaactcattgtcttcaataaatttctcatagagtttcaagttgccag 19284
Query: 168 tgcataaacttttcaccaacatggtgtatattttagccactgatgggtatgtccgtctta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19283 tgcataaacttttcaccaacatggtgtatattttagccactgatgggtatgtccgtctta 19224
Query: 228 acggtgctaaccttggataatgtcttaaatgtaatatcctcattggaattagatatatta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19223 acggtgctaaccttggataatgtcttaaatgtaatatcctcattggaattagatatatta 19164
Query: 288 gcacttggcttcttaccttgtacgtggaaggtatgcgtctcatacaaggtacagatgtca 347
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 19163 gcacttggcttcttaccttgtacgtggaaggtatgc-tctcatacaaggtacagatgtca 19105
Query: 348 aaagtctcttgcagccatttgaatcccaatgcgtagttattcttctcatacccgtagtat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19104 aaagtctcttgcagccatttgaatcccaatgcgtagttattcttctcatacccgtagtat 19045
Query: 408 agccccatgtaaaatttgaatcgaatgacaattaaatcattattgattcgagaaaggtac 467
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 19044 agccccatgtaaaatttgaatcgaatgacaagtaaatcattattgattcgagaaaggtac 18985
Query: 468 ggtccgatttcattgaaatgagattcgaacactttacacatgttgttcaataatccatac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18984 ggtccgatttcattgaaatgagattcgaacactttacacatgttgttcaataatccatac 18925
Query: 528 gctttgatccggttgtacaacttgaacaacaatgtaccaatgtagaaaacaccgattttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18924 gctttgatccggttgtacaacttgaacaacaatgtaccaatgtagaaaacaccgattttc 18865
Query: 588 ctattttcatccactctttcgttacgatctttgaaacatatgtttaacgtcatatgcatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18864 ctattttcatccactctttcgttacgatctttgaaacatatgtttaacgtcatatgcatc 18805
Query: 648 actctccctgcctgaatcaaataggattcttcctcatctccatctccggtatcttctggt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804 actctccctgcctgaatcaaataggattcttcctcatctccatctccggtatcttctggt 18745
Query: 708 ccgtccagcttgttttggatctcatctagcttattggcaatggcatacagttggttctcc 767
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18744 ccgtccagcttgttttggatctcatctagcttattggcaatggcatacagtt-gttctcc 18686
Query: 768 actctggtattacaacttcgtcatccaattcgtcctgttctcatatatttctg-tcaata 826
|||||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 18685 actctggtataacaactccgtcatccaattcgtcctgttctcatata-ttctgttcaata 18627
Query: 827 cacgaagatgtttcaaaaccaagtggaacaactggggcgaacctcccattggnttctttc 886
||||||| |||| |||| |||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 18626 cacgaagttgttccaaagccaagtggaacaactggggcgaacct-ccatttggttctttc 18568
Query: 887 tttgaaggttcttttcaactcattgccaaatttcaatcacttgc 930
||| | |||||||||||||||||| ||||||||||||| ||||
Sbjct: 18567 -ttgtaagttcttttcaactcattg-caaatttcaatcaattgc 18526
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7201
Number of Sequences: 1807
Number of extensions: 7201
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)