BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZC12RM1.SCF screened BAC_end
         (956 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1404                                                        1546   0.0  

>3x_Contig1404 
          Length = 8096

 Score = 1546 bits (780), Expect = 0.0
 Identities = 805/812 (99%), Gaps = 1/812 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   acattgatctggctagagcgactagggaaaagaacaaatattcggaagaagttctagtct 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473 acattgatctggctagagcgactagggaaaagaacaaatattcggaagaagttctagtct 5414

                                                                        
Query: 108  gtaataaggatatttcaatactttccgaacaattggaatcaattcgactggaaaaggaaa 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5413 gtaataaggatatttcaatactttccgaacaattggaatcaattcgactggaaaaggaaa 5354

                                                                        
Query: 168  gaattgaagaacaagtaatcgaaaacaatgaaagaaaagcagagttgaactctagcgtgg 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5353 gaattgaagaacaagtaatcgaaaacaatgaaagaaaagcagagttgaactctagcgtgg 5294

                                                                        
Query: 228  agaaattgaaacaagagcttctttctattgaaagagattccaatgagtttaaagcaaaag 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5293 agaaattgaaacaagagcttctttctattgaaagagattccaatgagtttaaagcaaaag 5234

                                                                        
Query: 288  aattagagtactcagatagattagagaagttgcatgggctacaagagtatgttaaaaaac 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5233 aattagagtactcagatagattagagaagttgcatgggctacaagagtatgttaaaaaac 5174

                                                                        
Query: 348  agctgagaagttatgaaacctcactacaaagtcttaaaatcagagacgtttccaaacttt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5173 agctgagaagttatgaaacctcactacaaagtcttaaaatcagagacgtttccaaacttt 5114

                                                                        
Query: 408  taagtcaattgaatgacggaataattgagtcatgcacagatgtaactgctaaggtaatga 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5113 taagtcaattgaatgacggaataattgagtcatgcacagatgtaactgctaaggtaatga 5054

                                                                        
Query: 468  atggtgacatagttcaaacgcagtctatcacagatgtcggaaataatgacgctatggaag 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5053 atggtgacatagttcaaacgcagtctatcacagatgtcggaaataatgacgctatggaag 4994

                                                                        
Query: 528  attctggtgaagctgcaacccacagcgggttaccaagtttgacggaaaccgagttggaaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4993 attctggtgaagctgcaacccacagcgggttaccaagtttgacggaaaccgagttggaaa 4934

                                                                        
Query: 588  atctcgatttagaaactctagaacttgaacttcatcaattacaagactacttggataact 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933 atctcgatttagaaactctagaacttgaacttcatcaattacaagactacttggataact 4874

                                                                        
Query: 648  ttaacggagatatagaagtactagaggaatacgcacgcaggcttgcagaataccaacgtc 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4873 ttaacggagatatagaagtactagaggaatacgcacgcaggcttgcagaataccaacgtc 4814

                                                                        
Query: 708  gaaaactagacttaaatcaagcagttgccaaaatggaagaagtaagaaataagtgtgaaa 767
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4813 gaaaactagacttaaatcaagcagttgccaaaagggaagaagtaagaaataagtgtgaaa 4754

                                                                        
Query: 768  gtttcaagaatgagagactagagaaatttatggaagggtttcggcttcatatctatgact 827
            ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 4753 gtttcaagaatgagagactagagaaatttatggaa-ggtttcggcatcatatctatgact 4695

                                            
Query: 828  cttaaagggatgtatcagatgattaccatggg 859
            || || |  |||||||||||||||||||||||
Sbjct: 4694 ctaaaggaaatgtatcagatgattaccatggg 4663


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7862
Number of Sequences: 1807
Number of extensions: 7862
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)