BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD01FM1.SCF screened BAC_end
(869 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1439 0.0
>3x_Contig1687
Length = 12800
Score = 1439 bits (726), Expect = 0.0
Identities = 768/777 (98%), Gaps = 4/777 (0%)
Strand = Plus / Minus
Query: 89 aatttctcaaatctcatctacc-cccaacagggagtcgagccaaccaccacatctggttc 147
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 10504 aatttctcaaatctcatctaccacccaacagggagtcgagccaaccaccacatctggttc 10445
Query: 148 tacttcttctccagattccatcagttctactacaacgatttcttcgacaaaaactgttgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10444 tacttcttctccagattccatcagttctactacaacgatttcttcgacaaaaactgttgt 10385
Query: 208 gaacggcaaagtcagtatcgctagttctactgacgtaacaacatctcaacaagcagtaac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10384 gaacggcaaagtcagtatcgctagttctactgacgtaacaacatctcaacaagcagtaac 10325
Query: 268 acagtctactgctatcagtgtcactagctcaaccgaggtaaccacatctcaacagccaac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10324 acagtctactgctatcagtgtcactagctcaaccgaggtaaccacatctcaacagccaac 10265
Query: 328 aacgaagtctacaacgactttacaacctaccaccactgccgcaccaactacaattccaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10264 aacgaagtctacaacgactttacaacctaccaccactgccgcaccaactacaattccaga 10205
Query: 388 accatccagaacaactctacagcccagtacgactcaatcaagcgactcaactcaatctac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10204 accatccagaacaactctacagcccagtacgactcaatcaagcgactcaactcaatctac 10145
Query: 448 tgactcctgggctgttacaagagctaaagaattaaacgaacaatttgtaaagggtgagtt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10144 tgactcctgggctgttacaagagctaaagaattaaacgaacaatttgtaaagggtgagtt 10085
Query: 508 aaatggtaaggactcttgctcggatggcgaaatctcatgcactgctgatggtaagattgc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10084 aaatggtaaggactcttgctcggatggcgaaatctcatgcactgctgatggtaagattgc 10025
Query: 568 catctgtaactacggagcatgggtttatacagaatgtgctgctggtacaacatgttttgc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10024 catctgtaactacggagcatgggtttatacagaatgtgctgctggtacaacatgttttgc 9965
Query: 628 atatgactctggtgactccgtgtacacttcctgtaacttcacttatttgaaaccagacgt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9964 atatgactctggtgactccgtgtacacttcctgtaacttcacttatttgaaaccagacgt 9905
Query: 688 ggttntctaatcagtggttacagaatgtccatcaacctcatacccaagcatgtttgcatt 747
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9904 ggttttctaatcagtggttacagaatgtccatcaacctcatacccaagcatgtttgcatt 9845
Query: 748 agggaatattattacatatatttccttcattttgatacagccctgttacatctngttaac 807
||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 9844 aggaattattattacatatatttccttcattttgatacag-cctgttacatct-gttaac 9787
Query: 808 gaaact-catttctttcattaatacccagtgatcgaacaaaatggtttacttatatc 863
|||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 9786 gaaactccatttcttccattaataaccagtgatcgaacaaaatggtttacttatatc 9730
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4853
Number of Sequences: 1807
Number of extensions: 4853
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 869
length of database: 10,358,551
effective HSP length: 16
effective length of query: 853
effective length of database: 10,329,639
effective search space: 8811182067
effective search space used: 8811182067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)