BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD01RM1.SCF screened BAC_end
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1562 0.0
>3x_Contig1786
Length = 33838
Score = 1562 bits (788), Expect = 0.0
Identities = 808/814 (99%), Gaps = 1/814 (0%)
Strand = Plus / Minus
Query: 49 tatacttccagattgatcagaacacacgagaccatgaatgagattctcaaagagtttggc 108
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 17210 tatacttccagattgatcagaacagaagagaccatgaatgagattctcaaagagtttggc 17151
Query: 109 aaacagcctgaatttcgtatcgtcagcggtgagctaccaccgcaacagacatcagataat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17150 aaacagcctgaatttcgtatcgtcagcggtgagctaccaccgcaacagacatcagataat 17091
Query: 169 ggtaaattcccagtttatcagagctggagattgaatgaaagacactacggttcatggcag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17090 ggtaaattcccagtttatcagagctggagattgaatgaaagacactacggttcatggcag 17031
Query: 229 ggtcaaagtaaacataaaatgttggaagagtatggtgaagaacagtatatgtatatcaga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17030 ggtcaaagtaaacataaaatgttggaagagtatggtgaagaacagtatatgtatatcaga 16971
Query: 289 agagattacctctggaaaacctccaaaagcagatttaaacagggagatggtacaagattt 348
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16970 agagattacctc-ggaaaacctccaaaagcagatttaaacagggagatggtacaagattt 16912
Query: 349 cgaccaaggtgatacaggatatgaatttaaagaaccaaacaggcatgttaaatatttgga 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 16911 cgaccaaggtgatacaggatatgaatttaaagaaccaaacaggcatgttaaatattggga 16852
Query: 409 ggaagagattactcatgatgaattgcccaatggtgagtctttgtgcgatgtcgttcaaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16851 ggaagagattactcatgatgaattgcccaatggtgagtctttgtgcgatgtcgttcaaag 16792
Query: 469 attgaaaccattgcttgaaaatatgattcttccgaacttgaaggaacgtggtgacagcct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16791 attgaaaccattgcttgaaaatatgattcttccgaacttgaaggaacgtggtgacagcct 16732
Query: 529 tatagtcggtcatggaagcacagtccgttcactcttaaagattttagaaggcattagcga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16731 tatagtcggtcatggaagcacagtccgttcactcttaaagattttagaaggcattagcga 16672
Query: 589 tactgacattaaggaagtcaatattcctaatgccattccttcagtcattgaactagatga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16671 tactgacattaaggaagtcaatattcctaatgccattccttcagtcattgaactagatga 16612
Query: 649 taatttcagatttattagaaaattctacttagacccagaaagtgccaaagtcaatgcaga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16611 taatttcagatttattagaaaattctacttagacccagaaagtgccaaagtcaatgcaga 16552
Query: 709 attagttcgccaggaaggattcaaggaataaatatatagatacaagtcaacggcacacat 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16551 attagttcgccaggaaggattcaaggaataaatatatagatacaagtcaacggcacacat 16492
Query: 769 tataaactttctatgttaatcaataatntctatagacatcgaattggggtacattctcct 828
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16491 tataaactttctatgttaatcaataatttctatagacatcgaattggggtacattctcct 16432
Query: 829 gtggcaagaanaaaatgagttgagaacagagaaa 862
|||||||||| |||||||||||||||||||||||
Sbjct: 16431 gtggcaagaaaaaaatgagttgagaacagagaaa 16398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6298
Number of Sequences: 1807
Number of extensions: 6298
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)