BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD02FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1000 1584 0.0
>3x_Contig1000
Length = 4837
Score = 1584 bits (799), Expect = 0.0
Identities = 849/858 (98%), Gaps = 6/858 (0%)
Strand = Plus / Plus
Query: 88 tgttctactacttaataaatgccataattcactttatgggtgcagagaagttatactaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 tgttctactacttaataaatgccataattcactttatgggtgcagagaagttatactaaa 1470
Query: 148 gacggctcttacagtagcaagggataacgtctttgcattagaaagattcaagaacgatat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 gacggctcttacagtagcaagggataacgtctttgcattagaaagattcaagaacgatat 1530
Query: 208 tgcagcattcatgagagataacaatattcaggtcgaaacaaacttcgaagaaatcaacca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 tgcagcattcatgagagataacaatattcaggtcgaaacaaacttcgaagaaatcaacca 1590
Query: 268 atataatattgtgaataatgcattaagaattttggatacagatcagcttgaggaatatca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 atataatattgtgaataatgcattaagaattttggatacagatcagcttgaggaatatca 1650
Query: 328 aatatcaaaaactgttgcttatggaatatatgactctttgaaaacccatttgttgagttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 aatatcaaaaactgttgcttatggaatatatgactctttgaaaacccatttgttgagttt 1710
Query: 388 agacaaaacagagaacattaatttaattaaggttaccagttcagaggtaaactacttggt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 agacaaaacagagaacattaatttaattaaggttaccagttcagaggtaaactacttggt 1770
Query: 448 aacatcgggatctcttaataattctgaagtttccataattccgaaaatatcatctacagc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 aacatcgggatctcttaataattctgaagtttccataattccgaaaatatcatctacagc 1830
Query: 508 gtacgaaaatgttacaaatattttactgcaactaggatccaagatgagcgcctcttcaat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 gtacgaaaatgttacaaatattttactgcaactaggatccaagatgagcgcctcttcaat 1890
Query: 568 acaagaacaaatcattgagtttctttcaatagaatcagatgtcttaaaaaactcaaacga 627
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1891 acaagaacaaatcattgagtttctgtcaatagaatcagatgtcttaaaaaactcaaacga 1950
Query: 628 agctctttggatagcttcaactttattaacagggtataaaaacactgacataagtgattt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 agctctttggatagcttcaactttattaacagggtataaaaacactgacataagtgattt 2010
Query: 688 tcttgcgcatgattcagacccaatctcctgccaatatgacattatagaaatggcaaatga 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 tcttgcgcatgattcagacccaatctcctgccaatatgacattatagaaatggcaaatga 2070
Query: 748 gcgggtatcaattttatcgaatc-aacggaactaaaacgag-tgcagcgcaccaatttga 805
||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct: 2071 gcgggtatcaattttatcgaatcaaacggaact-aaacgagttgcagcgcaccaatttga 2129
Query: 806 ctatgaatttgtttgctatg-aaacanatgattattctaatgggtaaagatttc-aagat 863
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 2130 ctatgaatttgtttgctatgcaaacaaatgattattctaatgggtaaagatttcaaagat 2189
Query: 864 gaaatgttagattacatctataatgtcattgaatgtttcgcaagcgatgatgagaac-ca 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2190 gaaatgttagattacatctataatgtcattgaatgtttcgcaagcgatgatgagaacaca 2249
Query: 923 agattcatttcggaaaat 940
||||||||||||| ||||
Sbjct: 2250 agattcatttcgggaaat 2267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7739
Number of Sequences: 1807
Number of extensions: 7739
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)