BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD03FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 1336 0.0
>3x_Contig1321
Length = 8217
Score = 1336 bits (674), Expect = 0.0
Identities = 763/789 (96%), Gaps = 3/789 (0%)
Strand = Plus / Plus
Query: 89 cctgaaggtgttagattgattagtattcttcagaacacaatttatagagaagttgaccac 148
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 768 cctgaaggtgttagattgattaatattcttcagaacacaatttatagagaagtt-accac 826
Query: 149 ctttgacagaaacgggaaaattttatctgcattttacttggagagtacagagagcttcta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ctttgacagaaacgggaaaattttatctgcattttacttggagagtacagagagcttcta 886
Query: 209 cacctggttggatggtttacaattattatcacaaagtaaacacgccaaattatcaccaga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 cacctggttggatggtttacaattattatcacaaagtaaacacgccaaattatcaccaga 946
Query: 269 aactgagaaacaaatcgatacattaataaaattaagaaggaacgtccaacttgctgctct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 aactgagaaacaaatcgatacattaataaaattaagaaggaacgtccaacttgctgctct 1006
Query: 329 tgatgataaatttagagatgatgagtcactggaatccttctcagaggaggaaacggatga 388
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1007 tgatgataaatttagagatgatgagtcactggaacccttctcagaggaggaaacggatga 1066
Query: 389 cttttattacaatccagaaactctaaagcaactctcgatgggtatatattacgaatgaga 448
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 ctttttttacaatccagaaactctaaagcaactctcgatgggtatatattacgaatgaga 1126
Query: 449 gttgatgattatgtaataacacctcaactgcgtttatgtagtatataatgaattttcatg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 gttgatgattatgtaataacacctcaactgcgtttatgtagtatataatgaattttcatg 1186
Query: 509 cgcattgataattaagccaaaactaagaacataggacagtaatttatttcttacccttct 568
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1187 cgcattgataattaagccaaaactaagaacataggacagtaatttatgtcttacccttct 1246
Query: 569 ttcccttctttccgtaggcagcttgcttcttgctgtattgacgttcctgatattcgacac 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 ttcccttctttccgtaggcagcttgcttcttgctgtattgacgttcctgatattcgacac 1306
Query: 629 gatctttttgtgt-cttttatatagccgaggattctcagccaatgcttcttgctggtttc 687
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1307 gatctttttgtgtgtttttatatagccgaggattctcagccaatgcttcttgctgttttc 1366
Query: 688 tcttcttactgttgattggctttttgttttttgcccaaacttggagcattttagagttct 747
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 1367 tcttcttactgttgattggctttttgttttttgccaaaacttgaagcattttagagttct 1426
Query: 748 tcttttcagcttctgattgaaaccagtttctttttgggcctgcactgatttctttcttgt 807
|||| ||||||||||||||||||||| ||||| |||| | |||||||||||||| |||||
Sbjct: 1427 tcttctcagcttctgattgaaaccaggttcttcttggccttgcactgatttcttccttgt 1486
Query: 808 gttttagcatgttttcaccttggcgaagntcc-ttttagctcttagaatcctcttccctt 866
||||||||||||||||||||| |||||| ||| ||| |||||| || ||| ||| |||
Sbjct: 1487 gttttagcatgttttcacctttgcgaagttccatttcagctctaagtatctctttctctt 1546
Query: 867 gcttttctt 875
|||||||||
Sbjct: 1547 gcttttctt 1555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7698
Number of Sequences: 1807
Number of extensions: 7698
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)