BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZD03RM1.SCF screened BAC_end
         (943 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1665                                                        1479   0.0  

>3x_Contig1665 
          Length = 15710

 Score = 1479 bits (746), Expect = 0.0
 Identities = 851/876 (97%), Gaps = 8/876 (0%)
 Strand = Plus / Minus

                                                                        
Query: 60   atgcgatgcctttctggctctaatctaagctagttttttctgtcaa-gacaaatactgga 118
            ||||||||||||||||| |||| || |||||||||||||||||||| |||||||||||||
Sbjct: 1029 atgcgatgcctttctggttctagtcgaagctagttttttctgtcaaagacaaatactgga 970

                                                                        
Query: 119  aattggttaaatgtaaagataaaaatacagaaatgttgaataggatagataggatgctat 178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  aattggttaaatgtaaagataaaaatacagaaatgttgaataggatagataggatgctat 910

                                                                        
Query: 179  taggaacctacatttggttcttttgtagctagtaaagtacttaaagcaggtttatgaggc 238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  taggaacctacatttggttcttttgtagctagtaaagtacttaaagcaggtttatgaggc 850

                                                                        
Query: 239  cattgaaatcataagtggcttacacagcttaattttagccatttgaaacagacataacac 298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  cattgaaatcataagtggcttacacagcttaattttagccatttgaaacagacataacac 790

                                                                        
Query: 299  ccttacattacatattaattcgacatgtttttccaattacatgtcaaccaccatgaaaaa 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  ccttacattacatattaattcgacatgtttttccaattacatgtcaaccaccatgaaaaa 730

                                                                        
Query: 359  aaaaggaaaacaaaagtttgaatctgaaccttttctattgccgtgaaaacaatgaacaaa 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  aaaaggaaaacaaaagtttgaatctgaaccttttctattgccgtgaaaacaatgaacaaa 670

                                                                        
Query: 419  gcagacagataaccttgataaaagccaagcaaatccagcatatatcttaatacgttgagc 478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  gcagacagataaccttgataaaagccaagcaaatccagcatatatcttaatacgttgagc 610

                                                                        
Query: 479  atcacaagcaaaattgcttgactttgtgtttttgtctttcctctcctggaccaataaata 538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  atcacaagcaaaattgcttgactttgtgtttttgtctttcctctcctggaccaataaata 550

                                                                        
Query: 539  tcgaataaaagatgtcatatcaccaaccttcaattccctccattgatgcaaatagtaaca 598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  tcgaataaaagatgtcatatcaccaaccttcaattccctccattgatgcaaatagtaaca 490

                                                                        
Query: 599  cgaacgggttttaccagccatcacaacagtattcgttccctcaaggatctatggcttttg 658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  cgaacgggttttaccagccatcacaacagtattcgttccctcaaggatctatggcttttg 430

                                                                        
Query: 659  gaaatgggatgcagggatctggcatggatttcggtggcagtaaacctagtggtacgccag 718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  gaaatgggatgcagggatctggcatggatttcggtggcagtaaacctagtggtacgccag 370

                                                                        
Query: 719  ctaatttcacanatgagcagttgacaccaggtcttttttaatgccttatctacccgtggg 778
            ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 369  ctaatttcacaaatgagcagttgacaccaggtc-tttttaatgccttatctacccgtggg 311

                                                                        
Query: 779  tattcattcgaaaccttc-ttgcttgaagaattggnaataatttccacccgtataattgc 837
            |||||||||| ||||||| |||||||||||||||| ||| | || || ||||||||||||
Sbjct: 310  tattcattcg-aaccttctttgcttgaagaattgggaatcaatttcaaccgtataattgc 252

                                                                        
Query: 838  taagac-aaatttgtgttagtaccgcntttctcacaaagg-ttattgaaagaaatccaag 895
            |||||| ||||||||||||||||||| ||||||||||||| |||| |||||| ||||| |
Sbjct: 251  taagacaaaatttgtgttagtaccgc-tttctcacaaaggtttatcgaaagacatccagg 193

                                                
Query: 896  a-gatttcgaatctgctgggcccataatcttttggt 930
            | |||| |||   |||||||||||| ||||||||||
Sbjct: 192  aggattccgatcttgctgggcccattatcttttggt 157


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7653
Number of Sequences: 1807
Number of extensions: 7653
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)