BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD06FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1798 1292 0.0
>3x_Contig1798
Length = 38968
Score = 1292 bits (652), Expect = 0.0
Identities = 736/758 (97%), Gaps = 5/758 (0%)
Strand = Plus / Minus
Query: 87 cactcaagaaatacggaagtgaagaatcgtcttcgttgacgctgttgtgatttgatttgg 146
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 18174 cactcaagaaatacggaagtgaagaatcatcttcgttgtcgctgttgtgatttgatttgg 18115
Query: 147 aattaggtaaatataatgttccctttaaagcaccagggtctaagtcatatgctagggatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18114 aattaggtaaatataatgttccctttaaagcaccagggtctaagtcatatgctagggatt 18055
Query: 207 ccatagaatgacttttgtcatcgaattgcagagttgagtctttacctgcgtatttcaaaa 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18054 ccatagaatgaccaatgtcatcgaattgcagagttgagtctttacctgcgtatttcaaaa 17995
Query: 267 gaacttgagcacctcctggatgcttgtgaaggaaactggttatatcgtacactttgccat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17994 gaacttgagcacctcctggatgcttgtgaaggaaactggttatatcgtacactttgccat 17935
Query: 327 gaatcacggtccaacagtcggaccgcgaactatgtcgtgctacttcatccatagttatta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17934 gaatcacggtccaacagtcggaccgcgaactatgtcgtgctacttcatccatagttatta 17875
Query: 387 gcgggtctctcattttaaataaatgaaatgctatgaatgctgtaccaaaaaaagaataaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17874 gcgggtctctcattttaaataaatgaaatgctatgaatgctgtaccaaaaaaagaataaa 17815
Query: 447 attctcagaaaatctaagcagaaacacaaaaataatcaccaatcaattgaacttccacga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17814 attctcagaaaatctaagcagaaacacaaaaataatcaccaatcaattgaacttccacga 17755
Query: 507 atatatagtgacggactgttgatcgattagtcgaaagcaacaaaacggaaacaaaacaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17754 atatatagtgacggactgttgatcgattagtcgaaagcaacaaaacggaaacaaaacaat 17695
Query: 567 tgttataatattgaacccaaaaaaaaaaaaaaaattgaatgggtcaatctagttgatagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17694 tgttataatattgaacccaaaaaaaaaaaaaaaattgaatgggtcaatctagttgatagt 17635
Query: 627 actgttcctcgtggaagcgatatagcagagctagcaataataaacttganaaacacagtt 686
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 17634 actgttcctcgtggaagcgatatagcagagctagcaataataaacttgaaaacaacagta 17575
Query: 687 aaagcaatcaatgtctcatccaatgggcccncctggtaataatatcaagaattacagnga 746
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct: 17574 aaagcaatcaatgtctcatccaatgggccc-cctggtaataatatcagtaattacagtga 17516
Query: 747 attctttatattctctagttggagatacagcttggtgatatacgtaaccatttggacggt 806
| |||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct: 17515 ttcctttatattctctagttggagatacagc-tggtgatatacgtaa-caattggacggt 17458
Query: 807 tacaaattgggaaagaaaaagattctgtgatgagtgga 844
||||| ||| ||||||||||| |||||||||||||||
Sbjct: 17457 aacaaa-tggaaaagaaaaaga-tctgtgatgagtgga 17422
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,894
Number of Sequences: 1807
Number of extensions: 17894
Number of successful extensions: 2591
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)