BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD06RM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1298 0.0
>3x_Contig1605
Length = 12373
Score = 1298 bits (655), Expect = 0.0
Identities = 713/727 (98%), Gaps = 4/727 (0%)
Strand = Plus / Minus
Query: 66 tttctttgaacttgaagcaacttgatgtttatccaattggtctctagaattggattgata 125
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10970 tttctttgaacttttagcaacttcgtgtttatccaattggtctctagaattggattgata 10911
Query: 126 cggtaccgacccaagccttctgaatacattcctgtattcagaatattctaaccaacagtt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10910 cggtaccgacccaagccttctgaatacattcctgtattcagaatattctaaccaacagtt 10851
Query: 186 ccatttgatacctcgcttatcccaaatacatcttttggccaatgcatccagtctggtaat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10850 ccatttgatacctcgcttatcccaaatacatcttttggccaatgcatccagtctggtaat 10791
Query: 246 tgaatcatgggtcgggatcgttttgatgttgctattcatgattgcacggcatttagcgat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10790 tgaatcatgggtcgggatcgttttgatgttgctattcatgattgcacggcatttagcgat 10731
Query: 306 ccaataattcatcacaacatgccctcccgtatgctctttaagattgataaggagcatctg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10730 ccaataattcatcacaacatgccctcccgtatgctctttaagattgataaggagcatctg 10671
Query: 366 atatactctgctgaactccgaactatatccctgcctgacaagacatttgaaaagaaggtc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10670 atatactctgctgaactccgaactatatccctgcctgacaagacatttgaaaagaaggtc 10611
Query: 426 ataacaatggagagttggttcaacttcaaacgttgctttaaaggtgttcactgtcataat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10610 ataacaatggagagttggttcaacttcaaacgttgctttaaaggtgttcactgtcataat 10551
Query: 486 acacatgtccattctgcctttttcggagaactgccttagatactcttcaaggaaaaaagg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10550 acacatgtccattctgcctttttcggagaactgccttagatactcttcaaggaaaaaagg 10491
Query: 546 atctttcacgcgaaaatttaagtgtcttgcatactccataagcttccaggaggcctggaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10490 atctttcacgcgaaaatttaagtgtcttgcatactccataagcttccaggaggcctggaa 10431
Query: 606 cttgtcccttttgattaatgaccggtggcatatcttgatgatttttgtatcaacaggaat 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10430 cttgtcccttttgattaatgaccggtggcatatcttgatgatttttgtatcaacaggaat 10371
Query: 666 atcattctctcgt-aaaagtctattatgacatttgaaggaatgtctttcctcttctagga 724
||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 10370 atcattctctcgtaaaaagtctattatgacattgaaaggaatgtc-ttcctcttctagga 10312
Query: 725 ttccgtataattaatggtatgttaaaagaacttcttctttcaaccattttctcttaaaaa 784
||||||||||| ||||||||||||| |||| || |||||||||||||||||| ||||||
Sbjct: 10311 ttccgtataatagatggtatgttaaaggaac-tcctctttcaaccattttctc-taaaaa 10254
Query: 785 tatagct 791
|||||||
Sbjct: 10253 tatagct 10247
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8228
Number of Sequences: 1807
Number of extensions: 8228
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)