BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD07FM1.SCF screened BAC_end
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1340 0.0
>3x_Contig1590
Length = 13653
Score = 1340 bits (676), Expect = 0.0
Identities = 714/727 (98%)
Strand = Plus / Minus
Query: 86 atagcgatcaatccgagtgtctattagcgtgggtagtaccagtggataaatttagtatcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 atagcgatcaatccgagtgtctattagcgtgggtagtaccagtggataaatttagtatcg 3741
Query: 146 catagaatgaacatgttcaggcaggctgtacgtagtttcgtgaggtaccaatcaactaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 catagaatgaacatgttcaggcaggctgtacgtagtttcgtgaggtaccaatcaactaca 3681
Query: 206 tcattaaatcctaaaattcttccattcaatgccaaggagactccaatcccaaaatgtgtg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3680 tcattaaatcctaaaattcttccattcaatgccaaggagactccaatcccaaaatgtgtg 3621
Query: 266 gaagctgtgtaccatgcaccattgaagatcgaaccaacacaccgtgatttgatagctgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 gaagctgtgtaccatgcaccattgaagatcgaaccaacacaccgtgatttgatagctgat 3561
Query: 326 atccaattacgttcatatgataatgaaaatctagactttttctccagttttgttctaaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 atccaattacgttcatatgataatgaaaatctagactttttctccagttttgttctaaga 3501
Query: 386 gctggttattatttaggaattccaatgaaagggccaaaaccactaccaacaaagagaaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 gctggttattatttaggaattccaatgaaagggccaaaaccactaccaacaaagagaaaa 3441
Query: 446 cgttggactgttatcagagctccattcgtgatggctaagtcgaaggagaactttgaaaga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 cgttggactgttatcagagctccattcgtgatggctaagtcgaaggagaactttgaaaga 3381
Query: 506 catacacatgctaggttaatccgtctatacgattgtaacaccgaattggtagaaacttta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3380 catacacatgctaggttaatccgtctatacgattgtaacaccgaattggtagaaacttta 3321
Query: 566 ttatcatatattttcaagcacggtatcagtggtgttggtatcaaatgtaacttatatcaa 625
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3320 ttatcatatatttccaagcacggtatcagtggtgttggtatcaaatgtaacttatatcaa 3261
Query: 626 agagaacctatagatttggacagtaaaaaagacggcccggagttggagaatattgatatc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3260 agagaacctatagatttggacagtaaaaaagacggcccggagttggagaatattgatatc 3201
Query: 686 tcgtcccaacttcaaggtctggatgacgttgtttgtgcttaggttgttgaattattgaac 745
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 3200 tcgtcccaacttcaaggtctggatgacgttgttggtgctaaggttgttgaattattgaac 3141
Query: 746 aatccanaaattcaaaaacattttgcataaaattccagtcccgacgactgccaccggtcc 805
|||||| || | |||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct: 3140 aatccagaattcaaaaaacatttgcaataaaattccagtccgaacgactggcaccggtcc 3081
Query: 806 agcaaaa 812
|||||||
Sbjct: 3080 agcaaaa 3074
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6111
Number of Sequences: 1807
Number of extensions: 6111
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)