BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD07RM1.SCF screened BAC_end
(867 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1404 1330 0.0
>3x_Contig1404
Length = 8096
Score = 1330 bits (671), Expect = 0.0
Identities = 756/775 (97%), Gaps = 7/775 (0%)
Strand = Plus / Plus
Query: 48 cttacttctggtccttctcctttttctgcttttcatgtaaaatttca-tgtgttgttcaa 106
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5481 cttacttctggtc-ttctcctttttctgcttttcatgtaaaatttcaatgtgttgttcaa 5539
Query: 107 gtgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattctat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5540 gtgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattctat 5599
Query: 167 ccttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgcaaat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5600 ccttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgcaaat 5659
Query: 227 gttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttctcgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5660 gttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttctcgt 5719
Query: 287 tcatagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcagcga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5720 tcatagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcagcga 5779
Query: 347 cccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagacgat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5780 cccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagacgat 5839
Query: 407 ctgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctataat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5840 ctgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctataat 5899
Query: 467 tagtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatattgac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5900 tagtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatattgac 5959
Query: 527 ttgccgtagtagcttttgatctcattaagccactttggggagaag-accccctcctgaca 585
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5960 ttgccgtagtagcttttgatctcattaagccactttggggagaagaaccccctcctgaca 6019
Query: 586 ttgtaccggaaatatcgattaattttccatccaacgtgaccactctgaacctttctttcc 645
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 6020 ttgtaccggaaatatcgattaatttcccatccaacgtgaccactctgaaccttcttttcc 6079
Query: 646 cgtaggctactcgattagcttgctgtaaatccctggcaactaacgtatttttgagaactg 705
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 6080 cgtaggctactcgattagcttgctgtaaatccctggcaactaacgtatctctgagaactg 6139
Query: 706 agtagaatgcaggtccggataaatcacggacaggggtttattagatc-aaaagcctaggt 764
||||||||||||||| | |||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 6140 agtagaatgcaggtcggaataaatcacggacagggg-ttataagatcaaaaagcctaggt 6198
Query: 765 acattttccagagtggcttattctgtccaaattgcgtttaccgtaatttttccaa 819
|||||||| ||||||| ||||||||||||||||| |||| |||||||| |||||
Sbjct: 6199 acattttcaggagtggc-tattctgtccaaattgcattta-cgtaatttatccaa 6251
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6793
Number of Sequences: 1807
Number of extensions: 6793
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 867
length of database: 10,358,551
effective HSP length: 16
effective length of query: 851
effective length of database: 10,329,639
effective search space: 8790522789
effective search space used: 8790522789
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)