BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD08FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1451 0.0
>3x_Contig1686
Length = 15382
Score = 1451 bits (732), Expect = 0.0
Identities = 834/856 (97%), Gaps = 9/856 (1%)
Strand = Plus / Minus
Query: 85 ttccagcttgagcctctgtagctcttgccaacgggtcaactgtgcttgtttgtgtaaatc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11002 ttccagcttgagcctctgtagctcttgccaacgggtcaactgtgcttgtttgtgtaaatc 10943
Query: 145 gaacccaaacacttttggaacgtatcttttcgttgggtgtttcggacacatctcggggaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10942 gaacccaaacacttttggaacgtatcttttcgttgggtgtttcggacacatctcggggaa 10883
Query: 205 tccttgcaagaacattccgggaaagctggtaccgaaatacgctccgtcaatggcactatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10882 tccttgcaagaacattccgggaaagctggtaccgaaatacgctccgtcaatggcactatg 10823
Query: 265 tctgcttgactttggattgtaaagatcttcacaacttggacaatatagtttcacacagtc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10822 tctgcttgactttggattgtaaagatcttcacaacttggacaatatagtttcacacagtc 10763
Query: 325 aatgcccggtatgtcatgtagtccaacaggaagtagcggttgatggttacaatgatacct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10762 aatgcccggtatgtcatgtagtccaacaggaagtagcggttgatggttacaatgatacct 10703
Query: 385 ggggcaccttccaaaatcggccgctttgtatttctgtagcatcttctgtaaacctttcgc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10702 ggggcaccttccaaaatcggccgctttgtatttctgtagcatcttctgtaaacctttcgc 10643
Query: 445 cgtgataatgtaacgtgcatggatcaatccgtacagcttccttgtatccgtttccaattg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10642 cgtgataatgtaacgtgcatggatcaatccgtacagcttccttgtatccgtttccaattg 10583
Query: 505 ttctaaacgtgctggtgacatgctctcgatgatgccttcttcaagatcatccaccatata 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10582 ttctaaacgtgctggtgacatgctctcgatgatgccttcttcaagatcatccaccatata 10523
Query: 565 ttgtaccacagtggtaaacttagatactgtcttttgtaaattgattagattgaacctatc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10522 ttgtaccacagtggtaaacttagatactgtcttttgtaaattgattagattgaacctatc 10463
Query: 625 cgtgatgtattccgtatcaatgtcacagaaatattcatggcctttttttccaagaaacaa 684
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10462 cgtgatgtattccgtatcaatgtcacagaaatattcatggccttttttcccaagaaacaa 10403
Query: 685 atcaatccaatattccacgtactcgccccgaatccgatccatcatcttgatcatttactt 744
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 10402 atcaatccaatattccacgtactcg-cccgaatccgatccatcatcttgatcatttacta 10344
Query: 745 ctagagcatcagccataactacgtccggttgttcagtggtctccacactttctttcagaa 804
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 10343 ctagagcatcagccataactacgtccggttgttcagtggtctccacactctc-ttcagga 10285
Query: 805 attgacatcttctattgaacctgatgatttttagatttcgaattttaaacctcctaggga 864
|||||||||| |||||||||||||||| || ||||| ||||| ||||||||||||| |||
Sbjct: 10284 attgacatctcctattgaacctgatga-ttctagatatcgaa-tttaaacctccta-gga 10228
Query: 865 aaaaaaatatgaggcttcctcaccttttatgatgaataagggcaatccaacccgttctta 924
||||||| ||||||| |||||| || | ||||||||||| |||||| ||| ||||||| |
Sbjct: 10227 aaaaaaaaatgaggc-tcctcagctataatgatgaataa-ggcaatacaa-ccgttctaa 10171
Query: 925 ttatggagtggctaat 940
||| ||||||||||||
Sbjct: 10170 tta-ggagtggctaat 10156
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6181
Number of Sequences: 1807
Number of extensions: 6181
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)