BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD08RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig197 1352 0.0
>3x_Contig197
Length = 1712
Score = 1352 bits (682), Expect = 0.0
Identities = 858/893 (96%), Gaps = 19/893 (2%)
Strand = Plus / Minus
Query: 49 tatattattgatgtttcgcattccgtacaaccagaacatc-tatgtctctagatttccta 107
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 1476 tatattattgatgtttcgcaatccgtacaaccagaacatcctatgtctctagatttccta 1417
Query: 108 agaatggatattaagaatgttaactcatatttccaaaaattgggaattgacattttccct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 agaatggatattaagaatgttaactcatatttccaaaaattgggaattgacattttccct 1357
Query: 168 gaacgggtgatcttccagttcatcatcagtgaggtcttagacaaattctatgttgattac 227
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 1356 gaacgggtgatcttccagttcatcatcagtgaggtcttagacaaattcaagggtgattac 1297
Query: 228 agatcaagcgatgatctagaaacatatgttgccgacaatttacctctaaagttgactgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 agatcaagcgatgatctagaaacatatgttgccgacaatttacctctaaagttgactgat 1237
Query: 288 gaagacgaagctgaagatgaagtgttcagatctttacatttgataagaaatttgggtggt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 gaagacgaagctgaagatgaagtgttcagatctttacatttgataagaaatttgggtggt 1177
Query: 348 ttagaggaaagagattttgatagattcactgatggtaaatttgacctactgaaatcatta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 ttagaggaaagagattttgatagattcactgatggtaaatttgacctactgaaatcatta 1117
Query: 408 attgctaatgaaaacaggaaatattccgaaaatttcacagcatcggagcaatatgaactc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 attgctaatgaaaacaggaaatattccgaaaatttcacagcatcggagcaatatgaactc 1057
Query: 468 tcttcttctgatgacgaggaagatgacgtagatggtgatgatctccctaacctcgtaacg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tcttcttctgatgacgaggaagatgacgtagatggtgatgatctccctaacctcgtaacg 997
Query: 528 gatatcaatgaagatgacatagctggatcagatgaagatgatgatagtgatgaaactaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gatatcaatgaagatgacatagctggatcagatgaagatgatgatagtgatgaaactaac 937
Query: 588 gatagttctgatggtgatggatgggtctccgataaagacactccactgaaagg-aaaaaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 936 gatagttctgatggtgatggatgggtctccgataaagacactccactgaaaggaaaaaaa 877
Query: 647 gtacgaagattaagatgctaaaaaacaacgtaagcaagatacaaaagaggccatacgtga 706
|||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 876 gtacgaagataaagatgctaaaaaacaacgtaagcaagaaacaaaagaggccaaacgtga 817
Query: 707 aaagaggaagacc-aagtaaaaaaacacgttaagaaaaagctcatttacaagacgaaaag 765
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 816 aaagaggaagaccaaagtaaaaaaacacgttaagaaaaagctcattaacaagacgaaaag 757
Query: 766 cgagaaatgattcattt-taaattctatgcaatttc-aatattttat-tttacttagcga 822
| ||||||||| |||| |||||||||||||| || ||||||| || ||||||||||||
Sbjct: 756 caagaaatgatcaatttaaaaattctatgcaatgtcaaatatttaatatttacttagcga 697
Query: 823 t-tttaatagatcc-ccgcttt-atgttg-cctacaaga-ctgcca-ttccatt--tgca 874
| || ||||||||| ||||||| |||||| ||||||||| |||||| ||||| | ||||
Sbjct: 696 tgttaaatagatccaccgctttgatgttgccctacaagacctgccatttccaataatgca 637
Query: 875 cgatc-tctccc-tgctttgtaag-tgatc-tttgcctt-ttttggcttcggc 922
||||| |||||| ||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 636 cgatcttctcccatgctttgtaagttgatcttttgccttcttttggcttcggc 584
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8929
Number of Sequences: 1807
Number of extensions: 8929
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)