BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD09RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1348 0.0
>3x_Contig1772
Length = 25851
Score = 1348 bits (680), Expect = 0.0
Identities = 771/796 (96%), Gaps = 4/796 (0%)
Strand = Plus / Minus
Query: 47 aatcccatttctcttacgacatcctgggaaagttgtttgccattgcatgccacgagatat 106
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 16032 aatcccattttcattacgacatcctgggaaagttgtttgccattgcatgccaggagatat 15973
Query: 107 taggagtccggggcctaatttattgcaggtactgcttagagggtttggaactccgataga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15972 taggagtccggggcctaatttattgcaggtactgcttagagggtttggaactccgataga 15913
Query: 167 acaggaaatatcatatccatcttctatttccttcaagtttatattgtttatttcaattct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15912 acaggaaatatcatatccatcttctatttccttcaagtttatattgtttatttcaattct 15853
Query: 227 ttcaattgtgtcataaatttcggctgagagatgcctaagtgtatcaatcacacttttcca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15852 ttcaattgtgtcataaatttcggctgagagatgcctaagtgtatcaatcacacttttcca 15793
Query: 287 taaaccgaaatctctccaatacaactttgctttgtttatactcaataaaacaatttcgtg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15792 taaaccgaaatctctccaatacaactttgctttgtttatactcaataaaacaatttcgtg 15733
Query: 347 tgagaaaactctctttttcaacttcagatccatactactccataagttaagtccatcgta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15732 tgagaaaactctctttttcaacttcagatccatactactccataagttaagtccatcgta 15673
Query: 407 cttcttctcccaaatttgtttcaaaattggaatcaactgctctgtgttgggcttcactaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672 cttcttctcccaaatttgtttcaaaattggaatcaactgctctgtgttgggcttcactaa 15613
Query: 467 tactaacagatccaagtcagtggtactattttgctgaatgttaatacatgtagtgttggg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15612 tactaacagatccaagtcagtggtactattttgctgaatgttaatacatgtagtgttggg 15553
Query: 527 tataataatttttcccaatgaaacgacgtcggtgtcgttttcttgcttgaaagtgtctaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15552 tataataatttttcccaatgaaacgacgtcggtgtcgttttcttgcttgaaagtgtctaa 15493
Query: 587 actgttcaaatcgaaacacagtttcttcataatcctagtcccggcaaaagagataagctt 646
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 15492 actgttcaaatcgaaacacagttccttcataatcctagtcccggcaaaagagataagctt 15433
Query: 647 cttttgtcgttccgataccgctgatccagcttcataatctaaccccaccgaagattttac 706
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 15432 cttttgtcgttccgatacggctgatccagcttcataatctaaccacaccgaggattttac 15373
Query: 707 ttcaagtttgtagtaccgcttcttgtcaatgtatgtccttccgtttaatgaaactat-at 765
| ||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||| ||
Sbjct: 15372 tccaagtttgtagtaccgcttctcgtcaatgtatgtccatccgttaaatgaaa-tatcat 15314
Query: 766 tggtttcaacatttgtgaaatcccccaaaatgctcctttaaaagaaacatcatttggaaa 825
|| ||||||||||||||| || | |||| ||||||| ||||| |||||||||| |||||
Sbjct: 15313 tgatttcaacatttgtgatat-ctccaatatgctcc-ttaaatgaaacatcatctggaag 15256
Query: 826 cccagattttacatat 841
| ||||||| ||||||
Sbjct: 15255 cacagatttaacatat 15240
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7661
Number of Sequences: 1807
Number of extensions: 7661
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)