BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZD10FM1.SCF screened BAC_end
         (887 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1675                                                        1300   0.0  

>3x_Contig1675 
          Length = 13954

 Score = 1300 bits (656), Expect = 0.0
 Identities = 690/698 (98%), Gaps = 3/698 (0%)
 Strand = Plus / Plus

                                                                         
Query: 86    caatcttcgagtcagataacgagacacctaccaaaataacttgagagtcaataccatgct 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10944 caatcttcgagtcagataacgagacacctaccaaaataacttgagagtcaataccatgct 11003

                                                                         
Query: 146   cagcctgtgatagcaaatccgatgcaacaaagtcaacatcagcttcttcatcacaaatga 205
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11004 cagcctgtgatagcaaatccgatgcaacaaattcaacatcagcttcttcatcacaaatga 11063

                                                                         
Query: 206   ccaagacttcacttggaccagctggcatatcgatagaacataaagcttgagtgtcgtttt 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11064 ccaagacttcacttggaccagctggcatatcgatagaacataaagcttgagtgtcgtttt 11123

                                                                         
Query: 266   gaacatacatttttgctgcggtaacaaactggttaccagggcctaagatttt-gtccact 324
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11124 gaacatacatttttgctgcggtaacaaactggttaccagggcctaagatttttgtccact 11183

                                                                         
Query: 325   ttaggaacggattcagtaccgtaggccattgcagcaatagcttgtgcaccacctgctaat 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11184 ttaggaacggattcagtaccgtaggccattgcagcaatagcttgtgcaccacctgctaat 11243

                                                                         
Query: 385   acgatctttgaagcaccgactttacttgcaacataaacaacttcaggagaaactctaccg 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11244 acgatctttgaagcaccgactttacttgcaacataaacaacttcaggagaaactctaccg 11303

                                                                         
Query: 445   tcagactttcttggaggtgatgcgaaaacaatttctttacatccagcaacctgngccggt 504
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11304 tcagactttcttggaggtgatgcgaaaacaatttctttacatccagcaacctgggccggt 11363

                                                                         
Query: 505   acacctaacataagcgcagtacttggtaagattgctgtaccacccggaatgtatagacca 564
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11364 acacctaacataagcgcagtacttggtaagattgctgtaccacccggaatgtatagacca 11423

                                                                         
Query: 565   accttttcgataggtctagggaacctagagcagacaacacctggttgagtttcgacatct 624
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11424 accttttcgataggtctagggaacctagagcagacaacacctggttgagtttcgacatct 11483

                                                                         
Query: 625   anggtttcactttgcatttgagcagcgtggaacttttttacattttcaatagacaggtcc 684
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11484 agggtttcactttgcatttgagcagcgtggaacttttttacattttcaatagacaggtcc 11543

                                                                         
Query: 685   aaagcatctcttagttcatcagtcaatccatcaaggtattcttctggataaggtgccttc 744
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 11544 aaagcatctcttagttcatcagtcaatccatcaaggtattcttctggataaggtgcc-tc 11602

                                                   
Query: 745   ccaaactggtggtttctaattgaacaccatcgaactta 782
             | |||||||| ||||||||||| |||||||||||||||
Sbjct: 11603 caaaactggt-gtttctaattggacaccatcgaactta 11639


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5135
Number of Sequences: 1807
Number of extensions: 5135
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)