BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZD10RM1.SCF screened BAC_end
         (866 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1453                                                         270   4e-72

>3x_Contig1453 
          Length = 8444

 Score =  270 bits (136), Expect = 4e-72
 Identities = 194/212 (91%), Gaps = 1/212 (0%)
 Strand = Plus / Minus

                                                                       
Query: 47  gcataaatatgctatgaaatacgaaaatatttgagtcttctaaaacgactcttaactgtc 106
           ||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 538 gcataaatatgttaggaaataggaaaatatttgag-cttctaaaacgactcttaactgtc 480

                                                                       
Query: 107 tattcccagaatcaatccggagaactatttgattactaagtttaaatgcttctagacaag 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tattcccagaatcaatccggagaactatttgattactaagtttaaatgcttctagacaag 420

                                                                       
Query: 167 tttcaactgcccatgagggggggcataccaatgtgcaagtccaagttttctagtcatctc 226
           ||||||||||||||||||||   ||||||||| | ||| ||||| ||||||| |||||||
Sbjct: 419 tttcaactgcccatgaggggtttcataccaattttcaattccaatttttctattcatctc 360

                                           
Query: 227 tttcatttttctaatttttgatagcaaaatta 258
           | |||| | || ||||||| ||| ||||||||
Sbjct: 359 tctcatctatcaaattttttatatcaaaatta 328


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6756
Number of Sequences: 1807
Number of extensions: 6756
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 866
length of database: 10,358,551
effective HSP length: 16
effective length of query: 850
effective length of database: 10,329,639
effective search space: 8780193150
effective search space used: 8780193150
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)