BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC49ZD10RM1.SCF screened BAC_end (866 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1453 270 4e-72 >3x_Contig1453 Length = 8444 Score = 270 bits (136), Expect = 4e-72 Identities = 194/212 (91%), Gaps = 1/212 (0%) Strand = Plus / Minus Query: 47 gcataaatatgctatgaaatacgaaaatatttgagtcttctaaaacgactcttaactgtc 106 ||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 538 gcataaatatgttaggaaataggaaaatatttgag-cttctaaaacgactcttaactgtc 480 Query: 107 tattcccagaatcaatccggagaactatttgattactaagtttaaatgcttctagacaag 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 tattcccagaatcaatccggagaactatttgattactaagtttaaatgcttctagacaag 420 Query: 167 tttcaactgcccatgagggggggcataccaatgtgcaagtccaagttttctagtcatctc 226 |||||||||||||||||||| ||||||||| | ||| ||||| ||||||| ||||||| Sbjct: 419 tttcaactgcccatgaggggtttcataccaattttcaattccaatttttctattcatctc 360 Query: 227 tttcatttttctaatttttgatagcaaaatta 258 | |||| | || ||||||| ||| |||||||| Sbjct: 359 tctcatctatcaaattttttatatcaaaatta 328 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6756 Number of Sequences: 1807 Number of extensions: 6756 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 866 length of database: 10,358,551 effective HSP length: 16 effective length of query: 850 effective length of database: 10,329,639 effective search space: 8780193150 effective search space used: 8780193150 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)