BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD11FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1407 0.0
>3x_Contig1216
Length = 5132
Score = 1407 bits (710), Expect = 0.0
Identities = 801/822 (97%), Gaps = 7/822 (0%)
Strand = Plus / Minus
Query: 87 tgtcctgtttgtagagcacctttaccaccactttagaggccattgccattatgtcgtagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2122 tgtcctgtttgtagagcacctttaccaccactttagaggccattgccattatgtcgtagc 2063
Query: 147 atggacagtgtcacgtttgcagccttttctatacgcagtataatttttaaccttaaatta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 atggacagtgtcacgtttgcagccttttctatacgcagtataatttttaaccttaaatta 2003
Query: 207 tgaaaatgattttatgattcataacttcaaatactcacttatcttgcacaacaacgaaga 266
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 tgaaaatgacattatgattcataacttcaaatactcacttatcttgcacaacaacgaaga 1943
Query: 267 taggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactattaggcatccac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 taggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactattaggcatccac 1883
Query: 327 aaaggtatgaatgagtatatcctacttatacaataatttaattccttttaaccgggctga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 aaaggtatgaatgagtatatcctacttatacaataatttaattccttttaaccgggctga 1823
Query: 387 tactaactgatcgtattggatctatatttttagcgtcaaagcatgcctgttcgacatgga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 tactaactgatcgtattggatctatatttttagcgtcaaagcatgcctgttcgacatgga 1763
Query: 447 tggcttgttaataaacaccgaagacatgtacactgttgctataaataaggtcttggaggc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 tggcttgttaataaacaccgaagacatgtacactgttgctataaataaggtcttggaggc 1703
Query: 507 acatgacaaaggtactatgtcttgggatctgaagttgcagttgcaaggtttgcctggtcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 acatgacaaaggtactatgtcttgggatctgaagttgcagttgcaaggtttgcctggtcc 1643
Query: 567 agaagctggccgtaaggttattgaatattatgatttacctttgtcattcgaagaatttga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 agaagctggccgtaaggttattgaatattatgatttacctttgtcattcgaagaatttga 1583
Query: 627 tacgttgaataggaaacatcaggcaatcctgtggccaacgagcaaatttctccctggaac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 tacgttgaataggaaacatcaggcaatcctgtggccaacgagcaaatttctccctggaac 1523
Query: 687 attagagcttattgcttacttaaaggaaa-gaacgttccaattgcgctctgcacctcttt 745
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1522 attagagcttattgcttacttaaaggaaaggaacgttccaattgcgctctgcacctcttc 1463
Query: 746 cactgtagaaaagtt-cattataaaactt-ccaccttactgaagctttcaaagcattcga 803
||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1462 cactgtagaaaagttccatcataaaacttcccaccttactgaagctttcaaagcattcga 1403
Query: 804 cgttat-attactggtgacgatcccagaattcc-aaaggcaagagttaacctttttcaaa 861
|||||| |||||||||||||||||||||||||| ||||||| || |||||||| || |
Sbjct: 1402 cgttataattactggtgacgatcccagaattccaaaaggcagaggtaaaccttttccaga 1343
Query: 862 tattttgcacctggggtttgaagg-attaaatgcttaattca 902
||| | ||| |||||| ||||||| |||||||||| ||||||
Sbjct: 1342 tatctggcaactgggg-ttgaaggaattaaatgctaaattca 1302
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6176
Number of Sequences: 1807
Number of extensions: 6176
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)