BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD12FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1360 0.0
>3x_Contig1654
Length = 17174
Score = 1360 bits (686), Expect = 0.0
Identities = 717/726 (98%), Gaps = 1/726 (0%)
Strand = Plus / Minus
Query: 88 cgcataatgatgtgagcctatccgttcttcttgatctaatgtcaaccgatgtgtgttgat 147
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 10004 cgcaaaatgatgtgagcctagccgttcttcttgatctaatgtcaaccgatgtgtgttgat 9945
Query: 148 gccaaaacttcaatggcctgtttaaagggaactaggaaaattgatgtccgggtaatactt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9944 gccaaaacttcaatggcctgtttaaagggaactaggaaaattgatgtccgggtaatactt 9885
Query: 208 tacggtggctaaatttgggaaagtcaatataaagaatcaatggtaagaggttgataataa 267
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9884 tacggtggcgaaatttgggaaagtcaatataaagaatcaatggtaagaggttgagaataa 9825
Query: 268 ctaagtcttgtgtagacgcaaatcaagggcttgggtaaaagatacttcacacagataatc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9824 ctaagtcttgtgtagacgcaaatcaagggcttgggtaaaagatacttcacacagataatc 9765
Query: 328 agcagctgttgagactctgacattgttcaattcaaacaggcaattcaatagcttttcata 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9764 agcagctgttgagactctgacattgttcaattcaaacaggcaattcaatagcttttcata 9705
Query: 388 aaatggtatgtgaatattcattccgatgcttggaatgctttagtttcccttttcctttga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704 aaatggtatgtgaatattcattccgatgcttggaatgctttagtttcccttttcctttga 9645
Query: 448 gtttaatttatgcctttaggataagaatctatgaataatgcaattaaattactaacgcgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9644 gtttaatttatgcctttaggataagaatctatgaataatgcaattaaattactaacgcgt 9585
Query: 508 tcaatccaattttcactgattgggatgatgttttattttcattctagacatcaataggta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9584 tcaatccaattttcactgattgggatgatgttttattttcattctagacatcaataggta 9525
Query: 568 ctggttacgatctttctaatagtgttttttctccggatggtaggaactttcaagttgagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9524 ctggttacgatctttctaatagtgttttttctccggatggtaggaactttcaagttgagt 9465
Query: 628 atgcggtgaaggcggtagagaacggctccacttctctgggtataaagtgtgaagacagcg 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 9464 atgcggtgaaggcggtagagaacggctccacttctctgggtataaagtgtgaagacggtg 9405
Query: 688 tcgtgttagctgttgaaaaact-attacttacaagcttctagtgccgggcaagaacaaga 746
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 9404 tcgtgttagctgttgaaaaactcattacttccaagcttctagtgccgggcaagaacaaga 9345
Query: 747 agattcagacagtggatcgtcatatccggtgcgtatattccgggttgatgcctgatggta 806
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9344 agattcagacagtggatcgtcatatcgggtgcgtatattccgggttgatgcctgatggta 9285
Query: 807 gacatt 812
||||||
Sbjct: 9284 gacatt 9279
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6356
Number of Sequences: 1807
Number of extensions: 6356
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)