BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZD12RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1320 0.0
>3x_Contig1584
Length = 9710
Score = 1320 bits (666), Expect = 0.0
Identities = 797/830 (96%), Gaps = 8/830 (0%)
Strand = Plus / Plus
Query: 48 atatactgccgctttcgtcct-accatgccgcatactttcccaaccttaaactcatcatc 106
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 1328 atatactgccgctttcgtccagaccatgccgcagactttcccaaccttaaactcatcatc 1387
Query: 107 ttattcatcattcatcattcgtccttctggtcttattctgtatcgcctggtctcttgtga 166
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1388 ttattcatcattcatcattcgtccttctggtcttattctgtatcacctggtctcttgtga 1447
Query: 167 aatcaaaaaaaaaaaagttggaaaaaaaaaagttttgaaaatcttaaacctgttgatata 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1448 aatcaaaaaaaaaaaagttggaaaaaaaaaagttttgaaaatcttaaacctgatgatata 1507
Query: 227 aaccattgattttaccacttaaacgagggtataatttgacatcatcaaagggcacaagac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 aaccattgattttaccacttaaacgagggtataatttgacatcatcaaagggcacaagac 1567
Query: 287 acaagaagaccattttgttcgataactgaggctacatacgcagttcaacctgtggatatt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1568 acaagaagaccattttgttcgataactgaggctacatacgcagttcaacctgtggatatt 1627
Query: 347 ttcagagcttagagaagtcttagagaagttcagcttaggtcgaagacgttatagtataag 406
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1628 ttcagagcttagagaagtcttagagaagttcagcttaggtcgaaga-gttatagtataag 1686
Query: 407 aattgagtatcgttcgttggctgtttttttgtgctatctattctaacggctttttttggt 466
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1687 aattgagtatcgttcgttggctgtttttttgtgctatctattctaacggttttttttggt 1746
Query: 467 ttaaacgagataggcttttggatacgataagcaagacaaggtagaatctgatctcggcat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 ttaaacgagataggcttttggatacgataagcaagacaaggtagaatctgatctcggcat 1806
Query: 527 tattgaactcttgactcctaagtatagagaattggtcaccgtcagagcaagtgagaaaga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 tattgaactcttgactcctaagtatagagaattggtcaccgtcagagcaagtgagaaaga 1866
Query: 587 tagcaattgggataaagagagcacaatacttttcaacaaaaaacagtattgtacctttga 646
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1867 tagcaattgggataaagagagcacaagacttttcaacaaaaaacagtattgtacctttga 1926
Query: 647 tccttaattttttgtttaacgaagacaaatcagctacgttttagagcgatgagctctatt 706
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 1927 tccttaattttttgttaaacgaagacaaatcagctacgttatagagcgatgagctctagt 1986
Query: 707 aatat-tattcaaattcaatgccctccgttgaaaccggttccaatggtagaggcaaatcc 765
||||| |||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 1987 aatataaattcaaatccaatgccatccgttgaaactggttccaatggtagaagcaaatcc 2046
Query: 766 ttttccga-aaagtaaaatt-attgaacttcatggtaagaccgtttaaaagactgccact 823
| ||| || |||||| |||| |||||||||||||| |||||||||| |||||||||||||
Sbjct: 2047 tcttcggagaaagtagaattaattgaacttcatggcaagaccgtttcaaagactgccact 2106
Query: 824 gttaa-cggtaatt-cttaagaaatctaataa-ggttgtgcccattgtaa 870
| ||| ||| |||| | ||||||||| || || ||||||| |||||||||
Sbjct: 2107 ggtaagcggaaattccataagaaatcgaaaaatggttgtgaccattgtaa 2156
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,379
Number of Sequences: 1807
Number of extensions: 15379
Number of successful extensions: 152
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)