BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE02RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig375 1213 0.0
>3x_Contig375
Length = 1974
Score = 1213 bits (612), Expect = 0.0
Identities = 645/652 (98%), Gaps = 3/652 (0%)
Strand = Plus / Plus
Query: 276 gaccgtacctttagaattctttg-ccagacatcaacattcttttgacaacctaacaatct 334
||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct: 1 gaccgtacctttagaattctttgtccatacatcaacattctttttacaacctaacaatct 60
Query: 335 tttgttccatgtcttccgtatcatagcccgtctatcggaaccctgtggtaaatttttata 394
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttttccatttcttccgtatcatagcccgtctatcggaaccctgtggtaaatttttata 120
Query: 395 ctgaattatttcttctaattccgcgaccatttgagttcttaccacaacaccataagcacg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgaattatttcttctaattccgcgaccatttgagttcttaccacaacaccataagcacg 180
Query: 455 gttgtaactttcgttcaccaaggcagacatttcagtaacaagaagatctctggcagcaaa 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttgtaactttcgttcaccaaggcagacatttcagtaacaagaagatctctggcagcaaa 240
Query: 515 gatttgttcttgtgctttatcgaaattgttgcgatgtagacaaagaacggcagcaaagaa 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatttgttcttgtgctttatcgaaattgttgcgatgtagacaaagaacggcagcaaagaa 300
Query: 575 ggccttatctggagattgtggtttcatcacctcaatgtactgctcgattcgatcccattg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggccttatctggagattgtggtttcatcacctcaatgtactgctcgattcgatcccattg 360
Query: 635 agctaaaccccacgcagcacccgcagccagaggagcgattgctctcttaatgtctatctt 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agctaaaccccacgcagcacccgcagccagaggagcgattgctctcttaatgtctatctt 420
Query: 695 tgacgaagcccacttgtctgctgcaagttcagacaattgatcccagtcacctaaggcgtg 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgacgaagcccacttgtctgctgcaagttcagacaattgatcccagtcacctaaggcgtg 480
Query: 755 taatgatctcattttaccaattgtaactttctatcgaatcttcaccagcagcctcacgct 814
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 481 taatgatctcattttaccaattgtaac-ttctatcgaatcttcaccagcagcctcacgct 539
Query: 815 tattatacgcagtcaaagcgtcatcccatctttgtaacttttcgtaccaagtttccttca 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tattatacgcagtcaaagcgtcatcccatctttgtaacttttcgtaccaagtttccttca 599
Query: 875 attgtagatcgtgggtgttgctgcgcatgcttcaaaataccgattgctgcat 926
|||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 600 attgtagatcgt-ggtgttgctgcgcatgcttcaaaataccgattgctgcat 650
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5914
Number of Sequences: 1807
Number of extensions: 5914
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)