BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE04FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig754 1522 0.0
>3x_Contig754
Length = 2158
Score = 1522 bits (768), Expect = 0.0
Identities = 826/840 (98%), Gaps = 4/840 (0%)
Strand = Plus / Plus
Query: 89 cacaattcatatctaccattgcatagccatttgtgacaatattggactcatatcattcag 148
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 746 cacaattcatatctaccattgcatcgccatttgtgacaatattggctacatatcat-cag 804
Query: 149 tcgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaactcttg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaactcttg 864
Query: 209 caatttattgctaatacggttatagaagttactccgaagacttccatagacgaggacgat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 caatttattgctaatacggttatagaagttactccgaagacttccatagacgaggacgat 924
Query: 269 ttggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacatattat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ttggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacatattat 984
Query: 329 atcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaatcaat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 atcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaatcaat 1044
Query: 389 tcgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacgaaagt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tcgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacgaaagt 1104
Query: 449 ccagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacagaagctg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 ccagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacagaagctg 1164
Query: 509 gcaaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtggtgca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 gcaaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtggtgca 1224
Query: 569 attgtgtatgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaagatccg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 attgtgtatgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaagatccg 1284
Query: 629 ttctgatcgctagagtctcgggttattctagtttcatttaattctttctcgtggttgaga 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 ttctgatcgctagagtctcgggttattctagtttcatttaattctttctcgtggttgaga 1344
Query: 689 ttatcacaattacataggaattgtctgtctactctatatgttctatgtactcatataagt 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 ttatcacaattacataggaattgtctgtctactctatatgttctatgtactcatataagt 1404
Query: 749 gtacgctttgacaatctgaaatgctattcatatttagcgcttttgataatcttgttttta 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 gtacgctttgacaatctgaaatgctattcatatttagcgcttttgataatcttgttttta 1464
Query: 809 tttccttgtagcatgtttacaatcttttgctttgacgcgcaacagctttgctcttagacc 868
||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1465 tttccctgtagcatgtttacaatc-tttgctttgacgcgcaacagctttgctctaggacc 1523
Query: 869 tgtcgatggcagtatcttatcaagcttctt-caggggtatcagttgcttagaaattaggt 927
|||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct: 1524 tgtcgatgcaagtatcttatc-agcttcttccagggttatcagttgcttagaaattaggt 1582
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6465
Number of Sequences: 1807
Number of extensions: 6465
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)