BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE05FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1459 0.0
>3x_Contig1770
Length = 29267
Score = 1459 bits (736), Expect = 0.0
Identities = 842/864 (97%), Gaps = 10/864 (1%)
Strand = Plus / Plus
Query: 89 ccagcgtactctctgactaacagaacacaaggatgtgaagagtttccacaaattggatgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26748 ccagcgtactctctgactaacagaacacaaggatgtgaagagtttccacaaattggatgt 26807
Query: 149 tggctgcatcacatgccttgcatagatgacaccaacggcatatgcggcaacaagactttc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26808 tggctgcatcacatgccttgcatagatgacaccaacggcatatgcggcaacaagactttc 26867
Query: 209 ttgtaaacagaaattctcgaacttgatccaattggagctattgcataatgagtttctaga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26868 ttgtaaacagaaattctcgaacttgatccaattggagctattgcataatgagtttctaga 26927
Query: 269 agtggcatgtttcaatacggaatgggtagtgtctagtttcttgcactgcttcgagcacca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26928 agtggcatgtttcaatacggaatgggtagtgtctagtttcttgcactgcttcgagcacca 26987
Query: 329 gatggtgttacacatgttacaatccaaattgttcttgatgatcaattgtgatgacaatgt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26988 gatggtgttacacatgttacaatccaaattgttcttgatgatcaattgtgatgacaatgt 27047
Query: 389 ggtgaaagcagagcacaaaccacaacatttacctctacttaccaaaggctgcttgtccaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27048 ggtgaaagcagagcacaaaccacaacatttacctctacttaccaaaggctgcttgtccaa 27107
Query: 449 ttgcggaatcacagtcaatggtaactgttcatggaagaccaatccacctttcctaatatc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27108 ttgcggaatcacagtcaatggtaactgttcatggaagaccaatccacctttcctaatatc 27167
Query: 509 atcggtggctactaatcctttcccaaactcagtatcagcaatggtaactttatccaacaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27168 atcggtggctactaatcctttcccaaactcagtatcagcaatggtaactttatccaacaa 27227
Query: 569 ttttttattcaactgggcaatatcagcatccgtaacggtactgggtctgatgtcgccagt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27228 ttttttattcaactgggcaatatcagcatccgtaacggtactgggtctgatgtcgccagt 27287
Query: 629 ataactgtccaattcgttcaactctggagtgtacaatttatgcgatttcaatgcttggta 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27288 ataactgtccaattcgttcaactctggagtgtacaatttatgcgatttcaatgcttggta 27347
Query: 689 taattcatctttggttactgaccaattggagcgtcgtcggatcaaatgttcgtacaacgt 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27348 taattcatctttggttactgaccaattggagcgtcgtcggatcaaatgttcgtacaacgt 27407
Query: 749 atctatcaacatatcttcggcagccgggttctttcttccaccaacggacccactttatcg 808
|||||||| |||||||||||||||| ||||||| |||||||||||||| |||||| ||||
Sbjct: 27408 atctatcagcatatcttcggcagcc-ggttcttccttccaccaacgga-ccacttcatcg 27465
Query: 809 ccagagctgggtttcggcttaggagtgatcaagctggaccccggtgctctgaatcttatt 868
|||||||||| |||||| ||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 27466 -cagagctggg-ttcggc-taggagtgatcaagctgga-cccggtgctctg-atcttcat 27520
Query: 869 cgttcacccgaagtggtct-tagcttcaaaggaaccatcacctcagggccaaggaaatta 927
|||||| ||||||| |||| |||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 27521 cgttcaaccgaagt-gtctctagcttcaaatgaaccatcacttca-ggccaaggaaatta 27578
Query: 928 acaagggaattatggttgttgatt 951
||| ||||||| | ||||| ||||
Sbjct: 27579 acaggggaatttttgttgtggatt 27602
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5977
Number of Sequences: 1807
Number of extensions: 5977
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)