BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE05RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1313 1576 0.0
>3x_Contig1313
Length = 8010
Score = 1576 bits (795), Expect = 0.0
Identities = 873/891 (97%), Gaps = 6/891 (0%)
Strand = Plus / Plus
Query: 49 attacattctttttattatatttaatgtgttcttagaatttcc-aatgtaaacctctc-c 106
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct: 2722 attacattctttttattatatttaatgtgttcttagaatttcccaatgtagacctctctc 2781
Query: 107 tattcttgtcctttcaatagtttttttctccactaaggaatagcctttgtttaaatccca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 tattcttgtcctttcaatagtttttttctccactaaggaatagcctttgtttaaatccca 2841
Query: 167 aacaaaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcggcaag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 aacaaaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcggcaag 2901
Query: 227 tatggcagaccagttccttcacgctagataaaacattggctggtcggagttgtgttaaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 tatggcagaccagttccttcacgctagataaaacattggctggtcggagttgtgttaaga 2961
Query: 287 aaaaattatgttgaaacggattcttgtacttgattttgatggcactatcaccactagtga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 aaaaattatgttgaaacggattcttgtacttgattttgatggcactatcaccactagtga 3021
Query: 347 taccaccagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgcatggac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 taccaccagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgcatggac 3081
Query: 407 tcattataccaagatatacgaggaatgctatattccaaaaccagagaatttggcacctga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 tcattataccaagatatacgaggaatgctatattccaaaaccagagaatttggcacctga 3141
Query: 467 tgcttggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagttcaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3142 tgcttggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagttcaat 3201
Query: 527 caacgaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctgcagct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3202 caacgaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctgcagct 3261
Query: 587 cgttaaggaaaaagtagatatcagacctggattacaggagctgatgcagcagtataacaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3262 cgttaaggaaaaagtagatatcagacctggattacaggagctgatgcagcagtataacaa 3321
Query: 647 gacgtacgtgctttcgttgaactggtccaaggacctcatacacgacctaacgggtatttc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3322 gacgtacgtgctttcgttgaactggtccaaggacctcatacacgacctaacgggtatttc 3381
Query: 707 caaatcggatatctactgtaacgaattaaaat-acgtgatggggaagtttacagcggaca 765
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3382 caaatcggatatctactgtaacgaattaaaatcacgtgatggggaagtttacagcggaca 3441
Query: 766 atttacaaagctaatattgaccggttgggacaagtacgagattttg-aagagatttgcga 824
||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 3442 atttacaaagcaaatattgaccggttgggacaagtacgagatgttgaaagagatttgcga 3501
Query: 825 tttagacaaagtgcaaggggaccagaaccatacttatattggagatagttttggcgattt 884
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 3502 tttagacaaagtgcaaggggaccagagcataacttatattggagatagttttggcgattt 3561
Query: 885 cgccttgtattctgggcaaa-aagtataatgatacattattggcgatcgct 934
|||||||||||||| ||| ||||| | |||||||||||||||||||||
Sbjct: 3562 -gccttgtattctggcaaaagaagtagatggatacattattggcgatcgct 3611
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6951
Number of Sequences: 1807
Number of extensions: 6951
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)