BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE06FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1375 1205 0.0
>3x_Contig1375
Length = 6996
Score = 1205 bits (608), Expect = 0.0
Identities = 697/714 (97%), Gaps = 10/714 (1%)
Strand = Plus / Plus
Query: 86 gaatcttcttaatcatagaggcaaagagtaaaacaattgcaagttgcaattgttccttaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4704 gaatcttcttaatcatagaggcaaagagtaaaacaattgcaagttgcaattgttccttaa 4763
Query: 146 ggttatttttggcattttggtaggtcttgaatatagaaatcgcgaccggaacaatcttgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4764 ggttatttttggcattttggtaggtcttgaatatagaaatcgcgaccggaacaatcttgg 4823
Query: 206 ggtaaaatgccagagttttgacacctaatgtttggattagagtcgtgagaacagttaatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 ggtaaaatgccagagttttgacacctaatgtttggattagagtcgtgagaacagttaatg 4883
Query: 266 aggagatctcgagttcgatcttcttggaagtcaattgcttgcaactgttttccatcgatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 aggagatctcgagttcgatcttcttggaagtcaattgcttgcaactgttttccatcgatt 4943
Query: 326 tcaccaataaatgagagtcgagcctatcaccaaatctggtaacaattgaactgatggtgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 tcaccaataaatgagagtcgagcctatcaccaaatctggtaacaattgaactgatggtgt 5003
Query: 386 tcaaagtaacttgtaaaatctgggtagattctgaggctttctctgttgtttccaccaaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 tcaaagtaacttgtaaaatctgggtagattctgaggctttctctgttgtttccaccaaag 5063
Query: 446 tacttagtatctcattggcggtttcgaaggactccatgggttcctcaataaacttgttag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 tacttagtatctcattggcggtttcgaaggactccatgggttcctcaataaacttgttag 5123
Query: 506 atgtcactacagttaaatgatgtctaacggactcatccgtatttccttgtagtagaggta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 atgtcactacagttaaatgatgtctaacggactcatccgtatttccttgtagtagaggta 5183
Query: 566 gaatagatgcgacgaagtcctgaataggaagcaaatctaggacgtgttccaataatccga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 gaatagatgcgacgaagtcctgaataggaagcaaatctaggacgtgttccaataatccga 5243
Query: 626 acaaaatgtcttttaactcttttttggtcgactttnggccttgcttttcag-acccgctt 684
||||||||||||||||||| |||||||||||| || ||||| || |||||| ||||||||
Sbjct: 5244 acaaaatgtcttttaactc-tttttggtcgac-ttcggcctcgc-tttcagaacccgctt 5300
Query: 685 cttcatcggttagatcctgcagatgagttgtttatcgtatgaaagactatcctgtcatgt 744
||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 5301 cttcatc-gttagatcctgcagatgag-tgtttatcgtatgaaagactat-ctgtcatgt 5357
Query: 745 ttattgcatttaaatggtnttctccaaaaaaatactgaattcaatttctgactt 798
| ||||||||| |||| | | || ||||| |||||||||||| |||||||||||
Sbjct: 5358 taattgcattt-aatgttttact-caaaagaatactgaattc-atttctgactt 5408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6370
Number of Sequences: 1807
Number of extensions: 6370
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)