BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE06RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1308 0.0
3x_Contig1585 462 e-130
>3x_Contig1475
Length = 10676
Score = 1308 bits (660), Expect = 0.0
Identities = 737/760 (96%), Gaps = 2/760 (0%)
Strand = Plus / Minus
Query: 78 cgttgataaagaaggtttctctgtgttcccattgtcacctgtcgaagtgttgtggattat 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8483 cgttgataaagaaggtttctctgtgttcccattgtcacctgtcgaagtgttgtggattat 8424
Query: 138 tgtcgttacctcatgtttcccagctatgggtcttggtttagagaaggccagtgttgacgt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8423 tgtcgttacctcatgtttcccagctatgggtcttggtttagagaaggccagtgttgacgt 8364
Query: 198 tatggaaaagccaccaaaggatgccaaggctgttgttttcacctgggaagtcattattga 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8363 tatggaaaagccaccaaaggatgccaaggctgttgttttcacctgggaagtcattattga 8304
Query: 258 tatgcttgtatacggtgtcatcatggcagcatgttgtatggcatgtttcgttaccgtgct 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8303 tatgcttgtatacggtgtcatcatggcagcatgttgtatggcatgtttcgttaccgtgct 8244
Query: 318 ctatggtaccggtgatggtaacttgggttctgactgtaacgatgcacttggtgaaacgtg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8243 ctatggtaccggtgatggtaacttgggttctgactgtaacgatgcacttggtgaaacgtg 8184
Query: 378 tcacttggttttcagaggccgtgctgcagcatttgcaacaatgacttggtgtgcattgat 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8183 tcacttggttttcagaggccgtgctgcagcatttgcaacaatgacttggtgtgcattgat 8124
Query: 438 tttagcctgggaagttgtcgacatgagaagatcattcttcatgatgaaccctgaaagtga 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8123 tttagcctgggaagttgtcgacatgagaagatcattcttcatgatgaaccctgaaagtga 8064
Query: 498 aacaccatacactcaagtgttcaaggacatctggagcaatcaattcttgttttggtccat 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8063 aacaccatacactcaagtgttcaaggacatctggagcaatcaattcttgttttggtccat 8004
Query: 558 tgttggtgggttctgttccgtgttcccagtggtttatatcccagtaatcaacgacaaagt 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8003 tgttggtgggttctgttccgtgttcccagtggtttatatcccagtaatcaacgacaaagt 7944
Query: 618 gttcttacattacaatatcagttacgaatggggattcgcaattcgattttagttcgcatt 677
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 7943 gttcttacattacaatatcagttacgaatggggattcgcaatcggatttagtttcgcatt 7884
Query: 678 ctgggcaggcgttgaattattacaatatggttagagacattacttcggcatcaaggacag 737
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 7883 ctgggcaggcgttgaattatacaaatatggtaagagacattacttcggcatcaaggacag 7824
Query: 738 agtcgaacatccaggaaatgatttataaaagagagcagtgcacgattcgtttcgacaata 797
|||||| |||||| |||||||||| |||||||||||||||||||| |||| ||||||
Sbjct: 7823 agtcgacaatccagaaaatgatttagaaaagagagcagtgcacgatccgttcgaacaata 7764
Query: 798 cactaccttccttcttcatgaagaattacttttcacaacg 837
|||||| |||||||| || | |||| |||||||||||||
Sbjct: 7763 cactac-ttccttctccagaatgaat-acttttcacaacg 7726
>3x_Contig1585
Length = 11490
Score = 462 bits (233), Expect = e-130
Identities = 574/685 (83%), Gaps = 2/685 (0%)
Strand = Plus / Plus
Query: 88 gaaggtttctctgtgttcccattgtcacctgtcgaagtgttgtggattattgtcgttacc 147
||||| ||||| || |||||||| || |||||||| || |||||| ||||||| ||||||
Sbjct: 336 gaagggttctcagtattcccattatctcctgtcgaggttttgtgggttattgttgttacc 395
Query: 148 tcatgtttcccagctatgggtcttggtttagagaaggccagtgttgacgttatggaaaag 207
|||||||| ||||| |||||||| ||||| |||||||| | ||||||||| ||||| |||
Sbjct: 396 tcatgttttccagcaatgggtctcggtttggagaaggctaatgttgacgtgatggagaag 455
Query: 208 ccaccaaaggatgccaaggctgttgttttcacctgggaagtcattattgatatgcttgta 267
||||||||||||||||| |||||| | ||||| ||||||||||| | |||||||||||
Sbjct: 456 ccaccaaaggatgccaaagctgttatattcacgtgggaagtcatcgtcgatatgcttgtc 515
Query: 268 tacggtgtcatcatggcagcatgttgtatggcatgtttcgttaccgtgctctatggtacc 327
|| ||||| || || ||||||||||| ||||||||||| || || || ||||||||||
Sbjct: 516 tatggtgtaattattgcagcatgttgcatggcatgttttgtcacggtaatctatggtact 575
Query: 328 ggtgatggtaacttgggttctgactgtaacgatgcacttggtgaaacgtgtcacttggtt 387
||||||||||| ||||| | |||||| ||| ||| ||| |||||| ||||||
Sbjct: 576 ggtgatggtaatttgggccgcgggtgtaacaatggctttgatgattcgtgtcgcttggtc 635
Query: 388 ttcagaggccgtgctgcagcatttgcaacaatgacttggtgtgcattgattttagcctgg 447
|||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||| |||
Sbjct: 636 ttcaagggccgtgctgcagcattcgcaactatgacgtggtgtgcattaattttagcttgg 695
Query: 448 gaagttgtcgacatgagaagatcattcttcatgatgaaccctgaaagtgaaacaccatac 507
|| ||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 696 gaggttgttgacatgagaagatcattcttcatgatgaatcctgaaactgagacaccatat 755
Query: 508 actcaagtgttcaaggacatctggagcaatcaattcttgttttggtccattgttggtggg 567
|| ||||||||||| || |||||||||||||||| || || ||||| |||||||||||
Sbjct: 756 acgcaagtgttcaaagatgtctggagcaatcaatttttattctggtcaattgttggtggc 815
Query: 568 ttctgttccgtgttcccagtggtttatatcccagtaatcaacgacaaagtgttcttacat 627
|| ||||| |||||||| |||||||| |||||||| || ||||||||||| |||||||||
Sbjct: 816 ttttgttctgtgttcccggtggtttacatcccagtgattaacgacaaagtattcttacat 875
Query: 628 tacaatatcagttacgaatggggattcgcaattcgattttagttcgcattctgggcaggc 687
||| |||||| ||| |||||||||||| | || | || || ||||||||||||||
Sbjct: 876 tacgatatcacttatgaatggggattctctcttggcttcagtttggcattctgggcaggt 935
Query: 688 gttgaattattacaa-tatggttagagacattacttcggcatcaaggacagagtcgaaca 746
| |||||| ||||| || || |||||| ||| ||||| | ||| |||||||||||| |
Sbjct: 936 gctgaatt-gtacaagtacggcaagagacgttatttcggaagcaaagacagagtcgaaaa 994
Query: 747 tccaggaaatgatttataaaagaga 771
||||| || ||||||| ||||||||
Sbjct: 995 tccagaaagtgatttagaaaagaga 1019
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6015
Number of Sequences: 1807
Number of extensions: 6015
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)