BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE07FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1404 0.0
>3x_Contig1794
Length = 36744
Score = 1404 bits (708), Expect = 0.0
Identities = 779/795 (97%), Gaps = 6/795 (0%)
Strand = Plus / Plus
Query: 89 cagctttaatcgagtttggattttctacgagacaacaccctattggaatcatccatggtt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31342 cagctttaatcgagtttggattttctacgagacaacaccctattggaatcatccatggtt 31401
Query: 149 tataaatgtcaatattaccgtagaaattagtagggattttaccatcagcatccacttgct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31402 tataaatgtcaatattaccgtagaaattagtagggattttaccatcagcatccacttgct 31461
Query: 209 taggaataacatactcagtctgaccaatggggtaaagcctctcttcatcttcgtcttctt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31462 taggaataacatactcagtctgaccaatggggtaaagcctctcttcatcttcgtcttctt 31521
Query: 269 cgacaggattctttattttgtgtgtcaaaagatgcttggcacccgacttcaatgctcttc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31522 cgacaggattctttattttgtgtgtcaaaagatgcttggcacccgacttcaatgctcttc 31581
Query: 329 cttgcatgtaccagtgcctagcactgtaacaagatattacatctttccttggaaaaactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31582 cttgcatgtaccagtgcctagcactgtaacaagatattacatctttccttggaaaaactt 31641
Query: 389 tgagaagggagtttgatttattacgaagtcgaaggaagccgcactgctgagcacccggtt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31642 tgagaagggagtttgatttattacgaagtcgaaggaagccgcactgctgagcacccggtt 31701
Query: 449 tcaatacctggtttgctctcaaatctttctctaagacgtagaacggatgattcttaatgt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31702 tcaatacctggtttgctctcaaatctttctctaagacgtagaacggatgattcttaatgt 31761
Query: 509 cttgtaggctgtctgggattccctcgtgttcattacgcaaatcaaaatattcatcctcat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31762 cttgtaggctgtctgggattccctcgtgttcattacgcaaatcaaaatattcatcctcat 31821
Query: 569 aatcatcaatcctgttcctattacgtttattcaaaaactntataatgctgttaaaccatt 628
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31822 aatcatcaatcctgttcctattacgtttattcaaaaactttataatgctgttaaaccatt 31881
Query: 629 cgttcagtttagcttctcttg-aatcctcttttttcgaactttattttg-aaatgtgcta 686
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 31882 cgttcagtttagcttctcttgtaatcctcttttttcgaactttattttgtaaatgtgcta 31941
Query: 687 tgtatctccgagatacatctttgcagccttgttttct-tcgaaagcgatgacatatcgca 745
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31942 tgtatctccgagatacatctttgcagccttgttttctatcgaaagcgatgacatatcgca 32001
Query: 746 tcatattggaggctgaatttatacgacctattggttctagttttgatttattacgccact 805
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 32002 tcatattgaaggctgaatttatacgacctattggttctagttttgatttataacg-cact 32060
Query: 806 tgttcaaatatttcttgaaccaccgatttcgatagtgatccattgntttcgaaaattttt 865
||||||| ||||||||| |||| |||| ||||||||||||||||| ||||| |||||| |
Sbjct: 32061 tgttcaattatttcttg-accaacgatatcgatagtgatccattg-tttcgcaaatttat 32118
Query: 866 cccctacctcgcacc 880
||| ||| |||||||
Sbjct: 32119 cccatacttcgcacc 32133
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7362
Number of Sequences: 1807
Number of extensions: 7362
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)