BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE08FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1265 0.0
>3x_Contig1781
Length = 20717
Score = 1265 bits (638), Expect = 0.0
Identities = 641/642 (99%)
Strand = Plus / Minus
Query: 91 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11817 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 11758
Query: 151 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11757 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 11698
Query: 211 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11697 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 11638
Query: 271 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11637 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 11578
Query: 331 atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11577 atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 11518
Query: 391 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11517 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 11458
Query: 451 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11457 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 11398
Query: 511 atttcgacagccgaggtacaatcgaaacggcaaagctagacagccagacagccagacggg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11397 atttcgacagccgaggtacaatcgaaacggcaaagctagacagccagacagccagacggg 11338
Query: 571 gggaccactggtctggggacaacccaccatctattagtcattctacaaactgaatgaagc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11337 gggaccactggtctggggacaacccaccatctattagtcattctacaaactgaatgaagc 11278
Query: 631 tcgatgaggagggaactgagttccgataaagacttgaagacatgtatgggatagtcagtg 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11277 tcgatgaggagggaactgagttccgataaagacttgaagacatgtatgggatagtcagtg 11218
Query: 691 tacgttggtatgcacgtgaattacgttgaggtatggggaaat 732
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11217 tacgttggtatgcacgtgatttacgttgaggtatggggaaat 11176
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,644
Number of Sequences: 1807
Number of extensions: 29644
Number of successful extensions: 6767
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)