BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE09FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 632 0.0
>3x_Contig343
Length = 1398
Score = 632 bits (319), Expect = 0.0
Identities = 403/419 (96%), Gaps = 9/419 (2%)
Strand = Plus / Plus
Query: 397 ttggcaaacatatattgtcaataaattatcctggcgtttctaac-ttatacataaatcta 455
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ttggcaaacatatattgtcaataaattatcctggcgtttctaaccttatacataaatcta 60
Query: 456 gcgattcacaattcattatatagaatttatgatttgaataaaaacgttacctttcttgaa 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgattcacaattcattatatagaatttatgatttgaataaaaacgttacctttcttgaa 120
Query: 516 tccgattttccagagaataccaacactatgttcaagtactcatcctaaccgagcaggtag 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccgattttccagagaataccaacactatgttcaagtactcatcctaaccgagcaggtag 180
Query: 576 tagtgaagatctacatactttcatcagcgttcatttttgtattcaggatatcggtttctt 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagtgaagatctacatactttcatcagcgttcatttttgtattcaggatatcggtttctt 240
Query: 636 gtggttcctgcatgatccatttccatatattttcgaaacaaaggattatttggattaagg 695
||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct: 241 gtgtttcctgcatgatccatttccatatattttcgaaacaaaggattatttgta-taaag 299
Query: 696 aagggaacttggcacgaatcctaaacgattaaac-aaaacgacaaccaa-tacaatgacc 753
|| ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 300 aaaggaacttggcacgaatcctaaacgattaaacaaaaacgacaacaaattacaatgacc 359
Query: 754 actgggccgttcgt-ccgcctggaaa-catca-ttttacaa-gaaaacggggaaatcaa 808
||| ||||| |||| ||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 360 act-ggccgatcgtgccgcctggaaatcatcatttttacaaggaaaacggcgaaatcaa 417
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7489
Number of Sequences: 1807
Number of extensions: 7489
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)