BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE09RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig272 1350 0.0
>3x_Contig272
Length = 1587
Score = 1350 bits (681), Expect = 0.0
Identities = 817/853 (95%), Gaps = 7/853 (0%)
Strand = Plus / Plus
Query: 47 caggcgacccattgtgctttcat-aaacttggttctgaaccataaccatttagcagtgaa 105
|||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 634 caggcgacgcattgt-ctttcatcaaacttggttctgaaccataaccatttagcagtgaa 692
Query: 106 tcagaatcattgctgtctccttcttttgagtgttgaatagacaactgggattctgacgga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcagaatcattgctgtctccttcttttgagtgttgaatagacaactgggattctgacgga 752
Query: 166 agactattaatagaacttggaggcatctcttctttatcttgacttccaattgattctgga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agactattaatagaacttggaggcatctcttctttatcttgacttccaattgattctgga 812
Query: 226 tgactgtctgatttggaccagttatcttcatctaccgcgtctttactgcctttgtcatct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tgactgtctgatttggaccagttatcttcatctaccgcgtctttactgcctttgtcatct 872
Query: 286 gaaattgcaacatcaccctgtattctagaaggaatttcagttgttgggtcaatcatttcg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaaattgcaacatcaccctgtattctagaaggaatttcagttgttgggtcaatcatttcg 932
Query: 346 tcttgcaactccactgatatttggctagtttctacttcagaagcagcattcttgaaaagt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tcttgcaactccactgatatttggctagtttctacttcagaagcagcattcttgaaaagt 992
Query: 406 tctacttcggtatcatctcctttaaggggttcttcctctgcactgactatcttgaaaggt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 tctacttcggtatcatctcctttaaggggttcttcctctgcactgactatcttgaaaggt 1052
Query: 466 tccacttcaacatcagctcttttaaccgactctgcttcagaatcatctcccttaaaggat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 tccacttcaacatcagctcttttaaccgactctgcttcagaatcatctcccttaaaggat 1112
Query: 526 tcttccccaacattcacaatctggacaggttcaacttcaaccttagctctcttaactgat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 tcttccccaacattcacaatctggacaggttcaacttcaaccttagctctcttaactgat 1172
Query: 586 tctgctacagactcaacttcactaaccgattctgctttcgcattatctggtttggtaatc 645
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 1173 tctgctacagactcaacttcactaaccgattctgctttcgcattatctgttttgttaatc 1232
Query: 646 ttcgtaacagattcagctagcttggccgattctatattactttttacagattctcggtca 705
| |||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct: 1233 tccgtagcagattcagctagcttggccgattctatatcacttttaacagattctctgtca 1292
Query: 706 tccgtatctttattgtttacgtatgcggcaaaatagccagtctttgatacccttcatttc 765
|||||||||| || |||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct: 1293 tccgtatcttcatcgtttacgtatgcggcaaaatagccagtcttcgata-ccttcaattc 1351
Query: 766 tgcatcaacttcatcctctgggatccctggtattgttaacgtccccaatctttgcagtcc 825
||||||| ||||||||||| ||||| |||||||||||||||||| || |||||||| |
Sbjct: 1352 tgcatcatcttcatcctct-ggatcactggtattgttaacgtcctcatcttttgcagt-c 1409
Query: 826 attttttgagaaattttgatgccttaaagaaattatatcattatttgacagatttttttc 885
|| | |||||| | |||||||| ||| |||| || ||||| | ||||||||||| ||||
Sbjct: 1410 atctcttgagata-tttgatgcattagagaatctagatcatca-ttgacagatttatttc 1467
Query: 886 ctgattttacaga 898
||||| |||||||
Sbjct: 1468 ctgatcttacaga 1480
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7006
Number of Sequences: 1807
Number of extensions: 7006
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)