BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE11FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1477 0.0
>3x_Contig1770
Length = 29267
Score = 1477 bits (745), Expect = 0.0
Identities = 808/826 (97%), Gaps = 3/826 (0%)
Strand = Plus / Minus
Query: 88 taagctcttgatgtttggctttaatttcatgttggcagaattatcaacaaaaattgacct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10009 taagctcttgatgtttggctttaatttcatgttggcagaattatcaacaaaaattgacct 9950
Query: 148 taaatgggataaaatggtcgattaataggtcagcgaaccacttattgaaacgaaaagcca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9949 taaatgggataaaatggtcgattaataggtcagcgaaccacttattgaaacgaaaagcca 9890
Query: 208 gtaaatgagatgattgcatgctacacattgcatataaccttgttaattcgagtgaagtgg 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9889 gtaaatgagatgagtgcatgctacacattgcatataaccttgttaattcgagtgaagtgg 9830
Query: 268 ccaatctgggccatgatagtggtttatgttacatggattgcactgaaattacgttacccg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9829 ccaatctgggccatgatagtggtttatgttacatggattgcactgaaattacgttacccg 9770
Query: 328 gtctctggattgatccctcaatatcaaaatctaaacaaagttgaagagctgatatgtaca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9769 gtctctggattgatccctcaatatcaaaatctaaacaaagttgaagagctgatatgtaca 9710
Query: 388 tttcagtaaagagtgctcgaagtcataaaaagggtggttaaataggttcattcaactctg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709 tttcagtaaagagtgctcgaagtcataaaaagggtggttaaataggttcattcaactctg 9650
Query: 448 tgagccaatatttctgtcaataacagaattctaatctgattccagtcataatacacccat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9649 tgagccaatatttctgtcaataacagaattctaatctgattccagtcataatacacccat 9590
Query: 508 ttttgcgaaatgcctagggttgctggaagctcaggaagcaagaaacaaggcaaggcaaag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9589 ttttgcgaaatgcctagggttgctggaagctcaggaagcaagaaacaaggcaaggcaaag 9530
Query: 568 aaggatttcagcaatgaagatgatgcgtataacgctctatttggtggtgagtttggggca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9529 aaggatttcagcaatgaagatgatgcgtataacgctctatttggtggtgagtttggggca 9470
Query: 628 ttagatattagtaattatactagtggtggcggcaatggtaagcaagatgaaacagagcat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9469 ttagatattagtaattatactagtggtggcggcaatggtaagcaagatgaaacagagcat 9410
Query: 688 ctgccgaatgctattgattttgaagatgaagatgaattggcagatgaagaattaccggna 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9409 ctgccgaatgctattgattttgaagatgaagatgaattggcagatgaagaattaccggag 9350
Query: 748 gaagaagagccatcccattctncgaaacagcataatgaagggtcgttttcagcggattct 807
||||||||||||||||||||| |||| |||||||||||||||| |||||||||| |||
Sbjct: 9349 gaagaagagccatcccattctccgaacaggcataatgaagggtcg-tttcagcggagtct 9291
Query: 808 gactgaagacgacgaatatatgactctgatggaccatgntgatgtgatgcattgaatttg 867
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 9290 gactgaagacgacgaatatatgactctgatggaccatggtgatgtgatgca-tgaagttg 9232
Query: 868 a-gcttctgggattggagtacaaggtaataatgcattggtcatgga 912
| ||| |||| ||| |||||||||||||||||||||| |||||||
Sbjct: 9231 acgctgctggatttgaagtacaaggtaataatgcattgttcatgga 9186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6656
Number of Sequences: 1807
Number of extensions: 6656
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)