BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE11RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig754 1592 0.0
>3x_Contig754
Length = 2158
Score = 1592 bits (803), Expect = 0.0
Identities = 857/871 (98%), Gaps = 3/871 (0%)
Strand = Plus / Plus
Query: 49 acacaattcatatctaccattgcatcggcatttgtgacaatagttggctacatatcatca 108
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 745 acacaattcatatctaccattgcatcgccatttgtgacaata-ttggctacatatcatca 803
Query: 109 gtcgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaactctt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtcgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaactctt 863
Query: 169 gcaatttattgctaatacggttatagaagttactccgaagacttccatagacgaggacga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gcaatttattgctaatacggttatagaagttactccgaagacttccatagacgaggacga 923
Query: 229 tttggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacatatta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tttggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacatatta 983
Query: 289 tatcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaatcaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 tatcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaatcaa 1043
Query: 349 ttcgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacgaaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 ttcgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacgaaag 1103
Query: 409 tccagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacagaagct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 tccagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacagaagct 1163
Query: 469 ggcaaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtggtgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 ggcaaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtggtgc 1223
Query: 529 aattgtgtatgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaagatcc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 aattgtgtatgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaagatcc 1283
Query: 589 gttctgatcgctagagtctcgggttattctagtttcatttaattctttctcgtggttgag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 gttctgatcgctagagtctcgggttattctagtttcatttaattctttctcgtggttgag 1343
Query: 649 attatcacaattacataggaattgtctgtctactctatatgttctatgtactcatataag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 attatcacaattacataggaattgtctgtctactctatatgttctatgtactcatataag 1403
Query: 709 tgtacgctttgacattctgaaatgctattcatatttagcgcttttgataatcctggtttt 768
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 1404 tgtacgctttgacaatctgaaatgctattcatatttagcgcttttgataatcttgttttt 1463
Query: 769 attttcctgtagcatgtttacaatctttgctttgacgcgcaacagctttgctctaggacc 828
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 atttccctgtagcatgtttacaatctttgctttgacgcgcaacagctttgctctaggacc 1523
Query: 829 tggcgatgcaagtatcttatcagcttctttcagggttatcagttggcttagaaataaggt 888
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct: 1524 tgtcgatgcaagtatcttatcagcttcttccagggttatcagtt-gcttagaaattaggt 1582
Query: 889 ggaat-gagtaccaaaagcttaacccatgac 918
|||| |||||||||||||| |||||||||
Sbjct: 1583 tgaatagagtaccaaaagctagacccatgac 1613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6444
Number of Sequences: 1807
Number of extensions: 6444
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)