BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE12FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig907 511 e-145
3x_Contig1195 505 e-143
>3x_Contig907
Length = 3418
Score = 511 bits (258), Expect = e-145
Identities = 306/318 (96%), Gaps = 3/318 (0%)
Strand = Plus / Plus
Query: 92 atgttgatgattctgtgcaactgactcaattatattcacaaaggtaccagaaagcgaaaa 151
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3095 atgttgatgattctgtgcaactgactcaattatattcacaaaggtaccagacagcgaaaa 3154
Query: 152 attagcataatcagtgacaaagtgctgttcatttatggattttgcacactggtagaactc 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3155 attagcataatcagtgacaaagtgctgttcatttatggattttgcacactggtagaactc 3214
Query: 212 accatataatttgttgaaagtagctaagtcaactttattcacaaaaaataaacccatcaa 271
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3215 accatagaagtagttgaaagtagctaagtcaactttattcacaaaaaataaacccatcaa 3274
Query: 272 tattttgtggaaacatacaagccttttagggtcatcgaatgggaaatgaactgcagctag 331
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3275 tattttgtgg-aacatacaagccttttagggtcatcgaatgggaaatgaactgaagctag 3333
Query: 332 catgtaatgacggatcatataagtggaaaaaactgtttgcggtattatcacagtagtctt 391
|||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 3334 aatgtaatgacggataatataaaaggaaaaaa-tgtttgcggtattatcacagtagtctt 3392
Query: 392 aacatcatgtgcgtgctc 409
|||||||||||||||||
Sbjct: 3393 -acatcatgtgcgtgctc 3409
>3x_Contig1195
Length = 5875
Score = 505 bits (255), Expect = e-143
Identities = 298/306 (97%), Gaps = 5/306 (1%)
Strand = Plus / Plus
Query: 527 gcttgaattttccaatattgtgtataatatgcctttgaacatgtccaaacgattcaccct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gcttgaattttccaatattgtgtataatatgcctttgaacatgtccaaacgattcaccct 62
Query: 587 aaccgaattgaaggacacgtattttacccttttcccttgattaaaatctaaattcaaaca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aaccgaattgaaggacacgtattttacccttttcccttgattaaaatctaaattcaaaca 122
Query: 647 ttntgccagataaagtgaagtttgtcgaattatccatgttatccgagacgaggaaaggtc 706
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttttgccagataaagtgaagtttgtcgaattatccatgttatccgagacgaggaaaggtc 182
Query: 707 tgatcgcttctcactgtgacgcttatttttagagactgaaatgaactgtaaaatccagcg 766
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 183 tgatcgcttctcactgtgacgcttatttttagagactgaaatgaactgtagaatccagcg 242
Query: 767 gaaagagaaaaaaagcggccccataattcttcatcttagaagcttcgaagaattgcttga 826
||||||| |||||||||| ||||| |||||||||| ||||||| |||||||| |||||||
Sbjct: 243 gaaagag-aaaaaagcggtcccat-attcttcatc-tagaagc-tcgaagaa-tgcttga 297
Query: 827 ataatt 832
||||||
Sbjct: 298 ataatt 303
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7319
Number of Sequences: 1807
Number of extensions: 7319
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)