BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZE12RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1354 0.0
>3x_Contig1502
Length = 14970
Score = 1354 bits (683), Expect = 0.0
Identities = 771/795 (96%), Gaps = 4/795 (0%)
Strand = Plus / Minus
Query: 64 tgatagaataaaacacttcagtcattagatcgaaga-caatggcacttcataaatcttag 122
||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 3297 tgatagaataaaatacttcaagcattagatcgaagagcaatggcacttcataaatcttag 3238
Query: 123 ccatattcaataatcccaccgccacaggtgatagaggccatttaccatcaatttggccag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3237 ccatattcaataatcccaccgccacaggtgatagaggccatttaccatcaatttggccag 3178
Query: 183 tgaaaaaaaattccgcgaacgctttaacagtttctgtaggccaaggcatatataatgacc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3177 tgaaaaaaaattccgcgaacgctttaacagtttctgtaggccaaggcatatataatgacc 3118
Query: 243 taggtatgaatagaggctcgaaatcaacatcgcccgaattcagagtttgactggtcagac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3117 taggtatgaatagaggctcgaaatcaacatcgcccgaattcagagtttgactggtcagac 3058
Query: 303 tctcagtatttgaagcaaatgagtttcgctcgttttgaggggtagtcatgccatcagctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3057 tctcagtatttgaagcaaatgagtttcgctcgttttgaggggtagtcatgccatcagctt 2998
Query: 363 cgttatctggtttgtgtaaaggatctccgacaaatacctcatcaattctgtttggataga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2997 cgttatctggtttgtgtaaaggatctccgacaaatacctcatcaattctgtttggataga 2938
Query: 423 tattctcttgtgatatatgttgagaaatatcatggtgtaaagatgatcttctacttgata 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2937 tattctcttgtgatatatgttgagaaatatcatggtgtaaagatgatcttctacttgata 2878
Query: 483 atggagaagttgaagttcgatagcgagtatccggaaaaaaatgatccgaaagtcgattgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2877 atggagaagttgaagttcgatagcgagtatccggaaaaaaatgatccgaaagtcgattgt 2818
Query: 543 caacactaaaatcatgcgatgtatgtgtaggtagcgcatggagcggttcacttgggacag 602
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2817 caacactaaaatcatgcgatgtatgtgtaggtagcgcagggagcggttcacttgggacag 2758
Query: 603 gcagtaatggtggtagcgaaacattcagactcagtatttcttcagatcctgtacttttgt 662
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 2757 gcagtaatggtggtagcgaaacattcagactcagtatttcttcagatcctggacttctgt 2698
Query: 663 taattgactcttccattctatcggtttgaagagctgacaccagaaattgaacttgacgta 722
|||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 2697 aaattgactctcccattctatc-gcttgaagagctgacacgagaaattgaacttgacgta 2639
Query: 723 aaaactattgaagctttacgggagcttaatggacttttcagcccaaagcttgaattgaag 782
|| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 2638 gaagctaatgaagctttacgggagcttaatggactattcagcccaaagcttgaa-tgaag 2580
Query: 783 t-aattattattccccagtgactgagaaattttacaagaatgagctttgctagatctcag 841
| |||||| |||||||||||||||||| ||| ||| ||| ||||||| ||||||||||||
Sbjct: 2579 taaattatcattccccagtgactgagagattctacgagattgagcttggctagatctcag 2520
Query: 842 gaaatcgtcagtaaa 856
|||||||||||||||
Sbjct: 2519 gaaatcgtcagtaaa 2505
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6718
Number of Sequences: 1807
Number of extensions: 6718
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)