BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF01RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 1647 0.0
>3x_Contig1710
Length = 16151
Score = 1647 bits (831), Expect = 0.0
Identities = 867/875 (99%), Gaps = 3/875 (0%)
Strand = Plus / Minus
Query: 45 tatataatggtatcttctcgagatgatatttatctcaatcccaaacctgctcttgagctg 104
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7112 tatataatggtat-ttctcgagatgatatttatctcaatcccaaacctgctcttgagctg 7054
Query: 105 tataaatgctttcacaattgatggagtagagtaacttaccgattaatatgtggtgtaggg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7053 tataaatgctttcacaattgatggagtagagtaacttaccgattaatatgtggtgtaggg 6994
Query: 165 agtttactagtgtcaatttttggctagtgccagcggcctaaacggtggccacaattgtgc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6993 agtttactagtgtcaatttttggctagtgccagcggcctaaacggtggccacaattgtgc 6934
Query: 225 caggcaatgcaaatctcgaatgcgggtagcttatttcgtaatctgatgacagcgtcgcga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6933 caggcaatgcaaatctcgaatgcgggtagcttatttcgtaatctgatgacagcgtcgcga 6874
Query: 285 ctgtcaatagataaattcataatacgttgtatatatagatagtaggataaatggaaatga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6873 ctgtcaatagataaattcataatacgttgtatatatagatagtaggataaatggaaatga 6814
Query: 345 gtcagggtttactggtaccaggaatcaagtgtaataggtctgtttttctgttcgggtgcc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6813 gtcagggtttactggtaccaggaatcaagtgtaataggtctgtttttctgttcgggtgcc 6754
Query: 405 cactgcatttttttcttggtcattgcgtcttcttcccattctatttcgatggtagattta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6753 cactgcatttttttcttggtcattgcgtcttcttcccattctatttcgatggtagattta 6694
Query: 465 ctatttgcgagcatcgtggcacatgtttgccaagagaaccgtaccatgtagggagaccat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6693 ctatttgcgagcatcgtggcacatgtttgccaagagaaccgtaccatgtagggagaccat 6634
Query: 525 cccatcaatggtttcatctcgtttcgtagccattgaacggtttttgagtcaccaggatac 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6633 cccatcaatggtttcatctcgtttcgtagccattgaacggtttttgagtcaccaggatac 6574
Query: 585 cctgacccaaggatttcatcttcggttttcttgcattgtgaaaggatgatatctctggtc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6573 cctgacccaaggatttcatcttcggttttcttgcattgtgaaaggatgatatctctggtc 6514
Query: 645 acttttgctaccacactcgcaacacttacaatggggtaaatagaatcagcctttttcgca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6513 acttttgctaccacactcgcaacacttacaatggggtaaatagaatcagcctttttcgca 6454
Query: 705 acggtgaatttgcactgtgggaagatacttttcaatttcttttgatacgagataggcgga 764
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6453 acggtgaatttgcactgtgggaagatactttccaatttcttttgatacgagataggcgga 6394
Query: 765 cccacggtatcgacgtacacgtgacctactttaacaccagatttcaatacatcggctatc 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6393 cccacggtatcgacgtacacgtgacctactttaacaccagatttcaatacatcgtctatc 6334
Query: 825 aatgcgattgtcacatcgtgcgcctgttcattcaaattgtaattctttttctggtgggaa 884
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 6333 aatgcgattgtcacatcgtgcgcctgttcattcaaattgtaattc-ttttctggtggg-a 6276
Query: 885 acctgaacatttcgctgctgatataacatgcagtt 919
|||||||||| |||||||||||| ||||||||||
Sbjct: 6275 acctgaacatcccgctgctgatatcacatgcagtt 6241
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6458
Number of Sequences: 1807
Number of extensions: 6458
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)