BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF02FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig853 1483 0.0
>3x_Contig853
Length = 2329
Score = 1483 bits (748), Expect = 0.0
Identities = 808/824 (98%), Gaps = 3/824 (0%)
Strand = Plus / Minus
Query: 88 gatcgtttctgatgttgtagaaatcggtacacagttggtagaattggtagaaaccccagc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 gatcgtttctgatgttgtagaaatcggtacacagttggtagaattggtagaaaccccagc 1019
Query: 148 agattcttgccaagaagaagatcaagatcaaaacgacattgttcaccaattggatcacgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 agattcttgccaagaagaagatcaagatcaaaacgacattgttcaccaattggatcacgt 959
Query: 208 tacacaccttggccatgacagtctgacagtctttggtcagttgtggcaagtacttgatcc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tacacaccttggccatgacagtctgacagtctttggtcagttgtggcaagtacttgatcc 899
Query: 268 cgaaccatctgatattcaagaatggattggatagctcgaacatcaggaaaatacctgcgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 cgaaccatctgatattcaagaatggattggatagctcgaacatcaggaaaatacctgcgt 839
Query: 328 agtagttgatgtaaggttttaaaccaatagcataaaccaccgtagagatcaaaccgtgca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 agtagttgatgtaaggttttaaaccaatagcataaaccaccgtagagatcaaaccgtgca 779
Query: 388 gcacgaatgggagggtagagtagaccaatgaaatgtagatatcccataggaagtacccaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gcacgaatgggagggtagagtagaccaatgaaatgtagatatcccataggaagtacccaa 719
Query: 448 ttgcgaaaacgcataccttcacgttatatgggtccatgccaaagatacgatcgtgagagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttgcgaaaacgcataccttcacgttatatgggtccatgccaaagatacgatcgtgagagt 659
Query: 508 ttagatctggtttttcattgttatatgcaatggcctcgaaactgagataaagcacgatca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttagatctggtttttcattgttatatgcaatggcctcgaaactgagataaagcacgatca 599
Query: 568 gagattggatccaactcaccagacgaacggcactctggttgacaaggtctgcatgctgct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gagattggatccaactcaccagacgaacggcactctggttgacaaggtctgcatgctgct 539
Query: 628 tttccttagacttacgttggtctttcgtagtctccggatcccaggataacctataagaag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tttccttagacttacgttggtctttcgtagtctccggatcccaggataacctataagaag 479
Query: 688 ctagaggtgggaataagacccgttgagataacatgaatagcgcatgatacccgacggcaa 747
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 478 ctagaggtgggaataagacccgttgagataacaggaatagcgcatgatacccgacggcaa 419
Query: 748 tgtacaacacagtgtgttaaatggatagcatcacattcgaagtaatccattcattggatt 807
||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||
Sbjct: 418 tgtacaacacagtgtgtaaattggatagaatcacattcgaagtaatccatccattggatt 359
Query: 808 cgagatatgggatcacgtactcgggtcaatgagggtgccggaggtaaggacataacatag 867
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 358 cgagatatgggatcacgtactcggtcaaatgagggtg-cggaggtaaggacatcacatag 300
Query: 868 ggcgtggacagaactatctgttccg-aacagctgcgtggaacga 910
| |||| ||||| |||||||||| | ||||||||| ||||||||
Sbjct: 299 gtcgtgaacagatctatctgttcggaaacagctgc-tggaacga 257
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4827
Number of Sequences: 1807
Number of extensions: 4827
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)