BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF02RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 1626 0.0
>3x_Contig1637
Length = 14855
Score = 1626 bits (820), Expect = 0.0
Identities = 877/891 (98%), Gaps = 4/891 (0%)
Strand = Plus / Minus
Query: 48 ccttctaaagcttttttttttagtttaccgggggatgtctttaatttcataaaagtcctc 107
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8570 ccttctaaagcttttttttttagtttaccggtggatgtctttaatttcataaaagtcctc 8511
Query: 108 caatgtgttaacatagtgagtagaagtgtagaagtgtagaagtataagcgtctgcaaact 167
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8510 caatgtgttaacatagtgagtagaagtgtagaagtgtagaagtataag-gtctgcaaact 8452
Query: 168 agtccatcgttacgcgacgcgctgcagaggaatcagtaaatacaaatttatagccattta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8451 agtccatcgttacgcgacgcgctgcagaggaatcagtaaatacaaatttatagccattta 8392
Query: 228 atgaaatgtatatatcttatgttttttctaacagagatattgtgaattctattcaacctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8391 atgaaatgtatatatcttatgttttttctaacagagatattgtgaattctattcaacctt 8332
Query: 288 cttctgcacacattttgaagtaccattggcaacggagttccaagaataaattatagcccc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8331 cttctgcacacattttgaagtaccattggcaacggagttccaagaataaattatagcccc 8272
Query: 348 tgaaaacactataatagtcccagaaatagctgtttttgtcatgtggttgccgaagatgta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8271 tgaaaacactataatagtcccagaaatagctgtttttgtcatgtggttgccgaagatgta 8212
Query: 408 tacgcttaaaagaagactcgcaaatttcctgataagcatgatgacagataatgtaagagc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8211 tacgcttaaaagaagactcgcaaatttcctgataagcatgatgacagataatgtaagagc 8152
Query: 468 gtcagttaaacttgctaacaaattgacactctgaatacagatgaattgggtcaagttatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8151 gtcagttaaacttgctaacaaattgacactctgaatacagatgaattgggtcaagttatt 8092
Query: 528 ggcaatcaacatgaataattttcttggaagatttatgttcgtatacggtaacaggactgt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8091 ggcaatcaacatgaataattttcttggaagatttatgttcgtatacggtaacaggactgt 8032
Query: 588 ttcttttgactccatcaatagtggaagatccttcttcaaattcaaacgagtgaaaattgg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8031 ttcttttgactccatcaatagtggaagatccttcttcaaattcaaacgagtgaaaattgg 7972
Query: 648 aaacaatggtgttgagagtagatgacaataaaacgatgactcttcccaaaaccttccata 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7971 aaacaatggtgttgagagtagatgacaataaaacgatgactcttcccaaaaccttccata 7912
Query: 708 cttacgaaaggtatactcattaagaacagcgagtaatgacatcgccatcgttgataatga 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7911 cttacgaaaggtatactcattaagaacagcgagtaatgacatcgccatcgttgataatga 7852
Query: 768 aagtaattatataccgagaaatagcctgtttgacccgttagaatattgaaagctttccaa 827
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7851 aagtaataatataccgagaaatagcctgtttgacccgttagaatattgaaagctttccaa 7792
Query: 828 aaagtttatgccacgacgttaatttcagtagacctggaaacagaggttattatggccccn 887
|||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct: 7791 aaag-ttatgccacgacg-taatttcagtagacctgaaaacagaggtaattatggcccca 7734
Query: 888 ataagtcattatgagtgctgctattattttgacaaaaggatatctcttttt 938
| ||||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct: 7733 a-aagtcatcatgagtgctgctataatttgagcaaaaggatatctcttttt 7684
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8262
Number of Sequences: 1807
Number of extensions: 8262
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)