BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF03RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1560 0.0
>3x_Contig1800
Length = 38778
Score = 1560 bits (787), Expect = 0.0
Identities = 826/835 (98%), Gaps = 3/835 (0%)
Strand = Plus / Plus
Query: 48 aaaagttgagagttgacgtgccttccctaacaaaacccatcccatatcctttttgtccaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15862 aaaagttgagagttgacgtgccttccctaacaaaacccatcccatatcctttttgtccaa 15921
Query: 108 catgctcaaactttatttcagttttgtctagtttctgtgttatgcagataagctgtgcat 167
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15922 cat-ctcaaactttatttcagttttgtctagtttctgtgttatgcagataagctgtgcat 15980
Query: 168 ataaatgttggaaataagctaagctgttacgttttgttctcagttgttagcaagagcagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15981 ataaatgttggaaataagctaagctgttacgttttgttctcagttgttagcaagagcagt 16040
Query: 228 aaatcaaaaatgattgttcttttggaaccacccaagtaaaaaacatatccacatctgtaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16041 aaatcaaaaatgattgttcttttggaaccacccaagtaaaaaacatatccacatctgtaa 16100
Query: 288 gtgtccgcgataaaaccgaacccgaaagtgagattcctcccattattacgcacgaaggag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16101 gtgtccgcgataaaaccgaacccgaaagtgagattcctcccattattacgcacgaaggag 16160
Query: 348 ttattctcatcttgtcagtagccttatccgtatccgcttttttattattaccgtgacatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16161 ttattctcatcttgtcagtagccttatccgtatccgcttttttattattaccgtgacatt 16220
Query: 408 cactaagctattttgctagcccactcctaacacatagcgttttgagcgtcttgggtactt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16221 cactaagctattttgctagcccactcctaacacatagcgttttgagcgtcttgggtactt 16280
Query: 468 actatgaaaatgacagttaactacttttgactagtcacaggttttagatcaaagaatctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16281 actatgaaaatgacagttaactacttttgactagtcacaggttttagatcaaagaatctt 16340
Query: 528 gggaaaaagatcgtattttatagttaattttattgtttcatatctattattttgaggtgc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16341 gggaaaaagatcgtattttatagttaattttattgtttcatatctattattttgaggtgc 16400
Query: 588 tttacggactcctcgagctccaaaggcttagatatatctagctaaatctcgtggcacaac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16401 tttacggactcctcgagctccaaaggcttagatatatctagctaaatctcgtggcacaac 16460
Query: 648 cgcacaacattattattgaggctgtattgtgccttgcgacgagcagatcttcctacttaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16461 cgcacaacattattattgaggctgtattgtgccttgcgacgagcagatcttcctacttaa 16520
Query: 708 ggaatattccacgtcggtcaacatgacgcgtctatattgtgttgtacctcaaaacgcgta 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16521 ggaatattccacgtcggtcaacatgacgcgtctatattgtgttgtacctcaaaacgcgta 16580
Query: 768 aaagttgtttatgtttttcctcttctaaatataaatttcggtatttacgtccagtcatgt 827
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 16581 aagtttgtttatgtttttcctcttctggatataaattccggtatttacgtccagtcatgt 16640
Query: 828 cacatgatctggaagattagtgcttctaaaaa-gcaagctccttg-tcggatttg 880
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct: 16641 cacatgatctggaagattagtgcttctaaaaaggcaagctccctgttcggatttg 16695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6192
Number of Sequences: 1807
Number of extensions: 6192
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)