BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF04FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1525 1386 0.0
>3x_Contig1525
Length = 8924
Score = 1386 bits (699), Expect = 0.0
Identities = 782/806 (97%), Gaps = 3/806 (0%)
Strand = Plus / Minus
Query: 87 gcgtgttttacagactgtgaacatgaaacatagagctttatcgaattataaaggtggtag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906 gcgtgttttacagactgtgaacatgaaacatagagctttatcgaattataaaggtggtag 8847
Query: 147 attgtcgagtagaacagtcatcatgtaataccacacaagataggtctttgtatcagtaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8846 attgtcgagtagaacagtcatcatgtaataccacacaagataggtctttgtatcagtaat 8787
Query: 207 tgtcttataatatcggaatcctgtaactattaaataactactctataaactaatgtcact 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8786 tgtcttataatatcggaatcctgtaactattaaataactactctataaactaatgtcact 8727
Query: 267 tgtatgcatgaaggaatccctggggtgatcccctgaaaaaagccgccagtatgagcctct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8726 tgtatgcatgaaggaatccctggggtgatcccctgaaaaaagccgccagtatgagcctct 8667
Query: 327 tatccaccatttcctgtattatgtcgttggcattgtactcaggaccataatgttctctat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8666 tatccaccatttcctgtattatgtcgttggcattgtactcaggaccataatgttctctat 8607
Query: 387 atctttggaataaggagacgtttttgtttttgatttctgtttcactctcagcaattcgag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8606 atctttggaataaggagacgtttttgtttttgatttctgtttcactctcagcaattcgag 8547
Query: 447 acatgaacggtaaataccatctggaaatgtcttttaatttgtgtgttgctgaaaattcga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8546 acatgaacggtaaataccatctggaaatgtcttttaatttgtgtgttgctgaaaattcga 8487
Query: 507 gtgccaaattgttaataaaatctagttcaaatgcatcgctgttgtcttctgatttaaggc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8486 gtgccaaattgttaataaaatctagttcaaatgcatcgctgttgtcttctgatttaaggc 8427
Query: 567 gatagtcttttaaaacgccagtcttccttctggagctacgagtgtttccaagcattgtca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8426 gatagtcttttaaaacgccagtcttccttctggagctacgagtgtttccaagcattgtca 8367
Query: 627 gaacatttccttgaggtgagttattgactctagtcttgaggtattttatcatctcattaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8366 gaacatttccttgaggtgagttattgactctagtcttgaggtattttatcatctcattaa 8307
Query: 687 cgcanatactaaccttatcatgggcgaccacattgacgttctcgttatcattaaaacgta 746
|||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 8306 cgcaaatactaaccttatcatgggcgacaacattgacgtcttcgttatcattaaaacgta 8247
Query: 747 aaaactggttgcattttttttttccttaatgattgcatctgtgttttcccatgggaatta 806
||||||| ||||| ||||| || | ||||||||||||||||| |||||||||||||| ||
Sbjct: 8246 aaaactgtttgca-tttttcttccattaatgattgcatctgt-ttttcccatgggaa-ta 8190
Query: 807 gagggttatgatttattttccaaagggccttcacatatttccacccaacgtcataggaag 866
||| |||||||||||| | ||||||| || |||||| | |||| |||||||||||||||
Sbjct: 8189 gagtgttatgatttatatcccaaaggtgctccacatagtcccacacaacgtcataggaag 8130
Query: 867 tttcttcatacttaaaaaattgatgc 892
||||||||| ||| ||| |||||||
Sbjct: 8129 tttcttcatcattagaaatttgatgc 8104
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7298
Number of Sequences: 1807
Number of extensions: 7298
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)